#! /bin/sh
# From configure.ac Revision: 8979 .
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.61 for libSBML 3.3.2.
#
# Report bugs to <libsbml-team@caltech.edu>.
#
# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
# 2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
# This configure script is free software; the Free Software Foundation
# gives unlimited permission to copy, distribute and modify it.
## --------------------- ##
## M4sh Initialization.  ##
## --------------------- ##

# Be more Bourne compatible
DUALCASE=1; export DUALCASE # for MKS sh
if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
  emulate sh
  NULLCMD=:
  # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
  # is contrary to our usage.  Disable this feature.
  alias -g '${1+"$@"}'='"$@"'
  setopt NO_GLOB_SUBST
else
  case `(set -o) 2>/dev/null` in
  *posix*) set -o posix ;;
esac

fi




# PATH needs CR
# Avoid depending upon Character Ranges.
as_cr_letters='abcdefghijklmnopqrstuvwxyz'
as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
as_cr_Letters=$as_cr_letters$as_cr_LETTERS
as_cr_digits='0123456789'
as_cr_alnum=$as_cr_Letters$as_cr_digits

# The user is always right.
if test "${PATH_SEPARATOR+set}" != set; then
  echo "#! /bin/sh" >conf$$.sh
  echo  "exit 0"   >>conf$$.sh
  chmod +x conf$$.sh
  if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
    PATH_SEPARATOR=';'
  else
    PATH_SEPARATOR=:
  fi
  rm -f conf$$.sh
fi

# Support unset when possible.
if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
  as_unset=unset
else
  as_unset=false
fi


# IFS
# We need space, tab and new line, in precisely that order.  Quoting is
# there to prevent editors from complaining about space-tab.
# (If _AS_PATH_WALK were called with IFS unset, it would disable word
# splitting by setting IFS to empty value.)
as_nl='
'
IFS=" ""	$as_nl"

# Find who we are.  Look in the path if we contain no directory separator.
case $0 in
  *[\\/]* ) as_myself=$0 ;;
  *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
done
IFS=$as_save_IFS

     ;;
esac
# We did not find ourselves, most probably we were run as `sh COMMAND'
# in which case we are not to be found in the path.
if test "x$as_myself" = x; then
  as_myself=$0
fi
if test ! -f "$as_myself"; then
  echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
  { (exit 1); exit 1; }
fi

# Work around bugs in pre-3.0 UWIN ksh.
for as_var in ENV MAIL MAILPATH
do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
done
PS1='$ '
PS2='> '
PS4='+ '

# NLS nuisances.
for as_var in \
  LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
  LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
  LC_TELEPHONE LC_TIME
do
  if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
    eval $as_var=C; export $as_var
  else
    ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
  fi
done

# Required to use basename.
if expr a : '\(a\)' >/dev/null 2>&1 &&
   test "X`expr 00001 : '.*\(...\)'`" = X001; then
  as_expr=expr
else
  as_expr=false
fi

if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
  as_basename=basename
else
  as_basename=false
fi


# Name of the executable.
as_me=`$as_basename -- "$0" ||
$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
	 X"$0" : 'X\(//\)$' \| \
	 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
echo X/"$0" |
    sed '/^.*\/\([^/][^/]*\)\/*$/{
	    s//\1/
	    q
	  }
	  /^X\/\(\/\/\)$/{
	    s//\1/
	    q
	  }
	  /^X\/\(\/\).*/{
	    s//\1/
	    q
	  }
	  s/.*/./; q'`

# CDPATH.
$as_unset CDPATH


if test "x$CONFIG_SHELL" = x; then
  if (eval ":") 2>/dev/null; then
  as_have_required=yes
else
  as_have_required=no
fi

  if test $as_have_required = yes && 	 (eval ":
(as_func_return () {
  (exit \$1)
}
as_func_success () {
  as_func_return 0
}
as_func_failure () {
  as_func_return 1
}
as_func_ret_success () {
  return 0
}
as_func_ret_failure () {
  return 1
}

exitcode=0
if as_func_success; then
  :
else
  exitcode=1
  echo as_func_success failed.
fi

if as_func_failure; then
  exitcode=1
  echo as_func_failure succeeded.
fi

if as_func_ret_success; then
  :
else
  exitcode=1
  echo as_func_ret_success failed.
fi

if as_func_ret_failure; then
  exitcode=1
  echo as_func_ret_failure succeeded.
fi

if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
  :
else
  exitcode=1
  echo positional parameters were not saved.
fi

test \$exitcode = 0) || { (exit 1); exit 1; }

(
  as_lineno_1=\$LINENO
  as_lineno_2=\$LINENO
  test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
  test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
") 2> /dev/null; then
  :
else
  as_candidate_shells=
    as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  case $as_dir in
	 /*)
	   for as_base in sh bash ksh sh5; do
	     as_candidate_shells="$as_candidate_shells $as_dir/$as_base"
	   done;;
       esac
done
IFS=$as_save_IFS


      for as_shell in $as_candidate_shells $SHELL; do
	 # Try only shells that exist, to save several forks.
	 if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
		{ ("$as_shell") 2> /dev/null <<\_ASEOF
if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
  emulate sh
  NULLCMD=:
  # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
  # is contrary to our usage.  Disable this feature.
  alias -g '${1+"$@"}'='"$@"'
  setopt NO_GLOB_SUBST
else
  case `(set -o) 2>/dev/null` in
  *posix*) set -o posix ;;
esac

fi


:
_ASEOF
}; then
  CONFIG_SHELL=$as_shell
	       as_have_required=yes
	       if { "$as_shell" 2> /dev/null <<\_ASEOF
if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
  emulate sh
  NULLCMD=:
  # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
  # is contrary to our usage.  Disable this feature.
  alias -g '${1+"$@"}'='"$@"'
  setopt NO_GLOB_SUBST
else
  case `(set -o) 2>/dev/null` in
  *posix*) set -o posix ;;
esac

fi


:
(as_func_return () {
  (exit $1)
}
as_func_success () {
  as_func_return 0
}
as_func_failure () {
  as_func_return 1
}
as_func_ret_success () {
  return 0
}
as_func_ret_failure () {
  return 1
}

exitcode=0
if as_func_success; then
  :
else
  exitcode=1
  echo as_func_success failed.
fi

if as_func_failure; then
  exitcode=1
  echo as_func_failure succeeded.
fi

if as_func_ret_success; then
  :
else
  exitcode=1
  echo as_func_ret_success failed.
fi

if as_func_ret_failure; then
  exitcode=1
  echo as_func_ret_failure succeeded.
fi

if ( set x; as_func_ret_success y && test x = "$1" ); then
  :
else
  exitcode=1
  echo positional parameters were not saved.
fi

test $exitcode = 0) || { (exit 1); exit 1; }

(
  as_lineno_1=$LINENO
  as_lineno_2=$LINENO
  test "x$as_lineno_1" != "x$as_lineno_2" &&
  test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }

_ASEOF
}; then
  break
fi

fi

      done

      if test "x$CONFIG_SHELL" != x; then
  for as_var in BASH_ENV ENV
        do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
        done
        export CONFIG_SHELL
        exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"}
fi


    if test $as_have_required = no; then
  echo This script requires a shell more modern than all the
      echo shells that I found on your system.  Please install a
      echo modern shell, or manually run the script under such a
      echo shell if you do have one.
      { (exit 1); exit 1; }
fi


fi

fi



(eval "as_func_return () {
  (exit \$1)
}
as_func_success () {
  as_func_return 0
}
as_func_failure () {
  as_func_return 1
}
as_func_ret_success () {
  return 0
}
as_func_ret_failure () {
  return 1
}

exitcode=0
if as_func_success; then
  :
else
  exitcode=1
  echo as_func_success failed.
fi

if as_func_failure; then
  exitcode=1
  echo as_func_failure succeeded.
fi

if as_func_ret_success; then
  :
else
  exitcode=1
  echo as_func_ret_success failed.
fi

if as_func_ret_failure; then
  exitcode=1
  echo as_func_ret_failure succeeded.
fi

if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
  :
else
  exitcode=1
  echo positional parameters were not saved.
fi

test \$exitcode = 0") || {
  echo No shell found that supports shell functions.
  echo Please tell autoconf@gnu.org about your system,
  echo including any error possibly output before this
  echo message
}



  as_lineno_1=$LINENO
  as_lineno_2=$LINENO
  test "x$as_lineno_1" != "x$as_lineno_2" &&
  test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {

  # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
  # uniformly replaced by the line number.  The first 'sed' inserts a
  # line-number line after each line using $LINENO; the second 'sed'
  # does the real work.  The second script uses 'N' to pair each
  # line-number line with the line containing $LINENO, and appends
  # trailing '-' during substitution so that $LINENO is not a special
  # case at line end.
  # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
  # scripts with optimization help from Paolo Bonzini.  Blame Lee
  # E. McMahon (1931-1989) for sed's syntax.  :-)
  sed -n '
    p
    /[$]LINENO/=
  ' <$as_myself |
    sed '
      s/[$]LINENO.*/&-/
      t lineno
      b
      :lineno
      N
      :loop
      s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
      t loop
      s/-\n.*//
    ' >$as_me.lineno &&
  chmod +x "$as_me.lineno" ||
    { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
   { (exit 1); exit 1; }; }

  # Don't try to exec as it changes $[0], causing all sort of problems
  # (the dirname of $[0] is not the place where we might find the
  # original and so on.  Autoconf is especially sensitive to this).
  . "./$as_me.lineno"
  # Exit status is that of the last command.
  exit
}


if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
  as_dirname=dirname
else
  as_dirname=false
fi

ECHO_C= ECHO_N= ECHO_T=
case `echo -n x` in
-n*)
  case `echo 'x\c'` in
  *c*) ECHO_T='	';;	# ECHO_T is single tab character.
  *)   ECHO_C='\c';;
  esac;;
*)
  ECHO_N='-n';;
esac

if expr a : '\(a\)' >/dev/null 2>&1 &&
   test "X`expr 00001 : '.*\(...\)'`" = X001; then
  as_expr=expr
else
  as_expr=false
fi

rm -f conf$$ conf$$.exe conf$$.file
if test -d conf$$.dir; then
  rm -f conf$$.dir/conf$$.file
else
  rm -f conf$$.dir
  mkdir conf$$.dir
fi
echo >conf$$.file
if ln -s conf$$.file conf$$ 2>/dev/null; then
  as_ln_s='ln -s'
  # ... but there are two gotchas:
  # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
  # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
  # In both cases, we have to default to `cp -p'.
  ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
    as_ln_s='cp -p'
elif ln conf$$.file conf$$ 2>/dev/null; then
  as_ln_s=ln
else
  as_ln_s='cp -p'
fi
rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
rmdir conf$$.dir 2>/dev/null

if mkdir -p . 2>/dev/null; then
  as_mkdir_p=:
else
  test -d ./-p && rmdir ./-p
  as_mkdir_p=false
fi

if test -x / >/dev/null 2>&1; then
  as_test_x='test -x'
else
  if ls -dL / >/dev/null 2>&1; then
    as_ls_L_option=L
  else
    as_ls_L_option=
  fi
  as_test_x='
    eval sh -c '\''
      if test -d "$1"; then
        test -d "$1/.";
      else
	case $1 in
        -*)set "./$1";;
	esac;
	case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
	???[sx]*):;;*)false;;esac;fi
    '\'' sh
  '
fi
as_executable_p=$as_test_x

# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"

# Sed expression to map a string onto a valid variable name.
as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"



exec 7<&0 </dev/null 6>&1

# Name of the host.
# hostname on some systems (SVR3.2, Linux) returns a bogus exit status,
# so uname gets run too.
ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`

#
# Initializations.
#
ac_default_prefix=/usr/local
ac_clean_files=
ac_config_libobj_dir=.
LIBOBJS=
cross_compiling=no
subdirs=
MFLAGS=
MAKEFLAGS=
SHELL=${CONFIG_SHELL-/bin/sh}

# Identity of this package.
PACKAGE_NAME='libSBML'
PACKAGE_TARNAME='libsbml'
PACKAGE_VERSION='3.3.2'
PACKAGE_STRING='libSBML 3.3.2'
PACKAGE_BUGREPORT='libsbml-team@caltech.edu'

ac_unique_file="src/Makefile.in"
# Factoring default headers for most tests.
ac_includes_default="\
#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
#  include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
#  include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif"

ac_subst_vars='SHELL
PATH_SEPARATOR
PACKAGE_NAME
PACKAGE_TARNAME
PACKAGE_VERSION
PACKAGE_STRING
PACKAGE_BUGREPORT
exec_prefix
prefix
program_transform_name
bindir
sbindir
libexecdir
datarootdir
datadir
sysconfdir
sharedstatedir
localstatedir
includedir
oldincludedir
docdir
infodir
htmldir
dvidir
pdfdir
psdir
libdir
localedir
mandir
DEFS
ECHO_C
ECHO_N
ECHO_T
LIBS
build_alias
host_alias
target_alias
LIBSBML_VERSION_NUMERIC
USE_LAYOUT
USE_COMPRESSION
build
build_cpu
build_vendor
build_os
host
host_cpu
host_vendor
host_os
HOST_TYPE
SHAREDLIBEXT
RUN_LDPATH
CXX
CXXFLAGS
LDFLAGS
CPPFLAGS
ac_ct_CXX
EXEEXT
OBJEXT
CC
CFLAGS
ac_ct_CC
CPP
RANLIB
INSTALL_PROGRAM
INSTALL_SCRIPT
INSTALL_DATA
SET_MAKE
AUTOCONF
ACLOCAL
AR
SWIG
USE_SWIG
SWIGLIB
SWIGFLAGS
SWIG_CPPFLAGS
SWIG_LDFLAGS
SWIG_LIBS
PYTHON
USE_PYTHON
PYTHON_CPPFLAGS
PYTHON_LDFLAGS
PYTHON_LIBS
PYTHON_EXT
PERL
USE_PERL
PERL_CPPFLAGS
PERL_LDFLAGS
PERL_LIBS
JAVA
JAVAC
JAR
USE_JAVA
JAVA_CPPFLAGS
JAVA_LDFLAGS
JNIEXT
JNIBASENAME
JAVADOC_JAR
MEX
MATLAB
USE_MATLAB
MATLAB_CPPFLAGS
MATLAB_LDFLAGS
MATLAB_LIBS
MEX_FLAGS
MEXEXT
OCTAVE
MKOCTFILE
OCTAVE_CONFIG
USE_OCTAVE
MKOCTFILE_FLAGS
OCTAVEEXT
LOCALOCTFILEDIR
RUBY
USE_RUBY
RUBY_CPPFLAGS
RUBY_LDFLAGS
RUBY_LIBS
CSHARP_COMPILER
CSHARP_CILINTERPRETER
SN
GACUTIL
USE_CSHARP
CSHARP_CPPFLAGS
CSHARP_LDFLAGS
CSHARP_SWIGFLAGS
CSHARP_EXT
DOXYGEN
USE_DOXYGEN
GREP
EGREP
USE_EXPAT
EXPAT_CPPFLAGS
EXPAT_LDFLAGS
EXPAT_LIBS
CXXCPP
USE_XERCES
XERCES_CPPFLAGS
XERCES_LDFLAGS
XERCES_LIBS
XML2_CONFIG
USE_LIBXML
LIBXML_CPPFLAGS
LIBXML_LDFLAGS
LIBXML_LIBS
BUGGY_APPLE_LIBXML
USE_LIBCHECK
LIBCHECK_CPPFLAGS
LIBCHECK_LDFLAGS
LIBCHECK_LIBS
USE_ZLIB
ZLIB_CPPFLAGS
ZLIB_LDFLAGS
ZLIB_LIBS
USE_BZ2
BZ2_CPPFLAGS
BZ2_LDFLAGS
BZ2_LIBS
UNIVBINARY
USE_UNIVBINARY
LIBSBML_OPTIONS
LIBOBJS
LTLIBOBJS'
ac_subst_files=''
      ac_precious_vars='build_alias
host_alias
target_alias
CXX
CXXFLAGS
LDFLAGS
LIBS
CPPFLAGS
CCC
CC
CFLAGS
CPP
PYTHON
PERL
RUBY
CXXCPP
UNIVBINARY'


# Initialize some variables set by options.
ac_init_help=
ac_init_version=false
# The variables have the same names as the options, with
# dashes changed to underlines.
cache_file=/dev/null
exec_prefix=NONE
no_create=
no_recursion=
prefix=NONE
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
silent=
site=
srcdir=
verbose=
x_includes=NONE
x_libraries=NONE

# Installation directory options.
# These are left unexpanded so users can "make install exec_prefix=/foo"
# and all the variables that are supposed to be based on exec_prefix
# by default will actually change.
# Use braces instead of parens because sh, perl, etc. also accept them.
# (The list follows the same order as the GNU Coding Standards.)
bindir='${exec_prefix}/bin'
sbindir='${exec_prefix}/sbin'
libexecdir='${exec_prefix}/libexec'
datarootdir='${prefix}/share'
datadir='${datarootdir}'
sysconfdir='${prefix}/etc'
sharedstatedir='${prefix}/com'
localstatedir='${prefix}/var'
includedir='${prefix}/include'
oldincludedir='/usr/include'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
infodir='${datarootdir}/info'
htmldir='${docdir}'
dvidir='${docdir}'
pdfdir='${docdir}'
psdir='${docdir}'
libdir='${exec_prefix}/lib'
localedir='${datarootdir}/locale'
mandir='${datarootdir}/man'

ac_prev=
ac_dashdash=
for ac_option
do
  # If the previous option needs an argument, assign it.
  if test -n "$ac_prev"; then
    eval $ac_prev=\$ac_option
    ac_prev=
    continue
  fi

  case $ac_option in
  *=*)	ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
  *)	ac_optarg=yes ;;
  esac

  # Accept the important Cygnus configure options, so we can diagnose typos.

  case $ac_dashdash$ac_option in
  --)
    ac_dashdash=yes ;;

  -bindir | --bindir | --bindi | --bind | --bin | --bi)
    ac_prev=bindir ;;
  -bindir=* | --bindir=* | --bindi=* | --bind=* | --bin=* | --bi=*)
    bindir=$ac_optarg ;;

  -build | --build | --buil | --bui | --bu)
    ac_prev=build_alias ;;
  -build=* | --build=* | --buil=* | --bui=* | --bu=*)
    build_alias=$ac_optarg ;;

  -cache-file | --cache-file | --cache-fil | --cache-fi \
  | --cache-f | --cache- | --cache | --cach | --cac | --ca | --c)
    ac_prev=cache_file ;;
  -cache-file=* | --cache-file=* | --cache-fil=* | --cache-fi=* \
  | --cache-f=* | --cache-=* | --cache=* | --cach=* | --cac=* | --ca=* | --c=*)
    cache_file=$ac_optarg ;;

  --config-cache | -C)
    cache_file=config.cache ;;

  -datadir | --datadir | --datadi | --datad)
    ac_prev=datadir ;;
  -datadir=* | --datadir=* | --datadi=* | --datad=*)
    datadir=$ac_optarg ;;

  -datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
  | --dataroo | --dataro | --datar)
    ac_prev=datarootdir ;;
  -datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
  | --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
    datarootdir=$ac_optarg ;;

  -disable-* | --disable-*)
    ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
    # Reject names that are not valid shell variable names.
    expr "x$ac_feature" : ".*[^-._$as_cr_alnum]" >/dev/null &&
      { echo "$as_me: error: invalid feature name: $ac_feature" >&2
   { (exit 1); exit 1; }; }
    ac_feature=`echo $ac_feature | sed 's/[-.]/_/g'`
    eval enable_$ac_feature=no ;;

  -docdir | --docdir | --docdi | --doc | --do)
    ac_prev=docdir ;;
  -docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
    docdir=$ac_optarg ;;

  -dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
    ac_prev=dvidir ;;
  -dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
    dvidir=$ac_optarg ;;

  -enable-* | --enable-*)
    ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
    # Reject names that are not valid shell variable names.
    expr "x$ac_feature" : ".*[^-._$as_cr_alnum]" >/dev/null &&
      { echo "$as_me: error: invalid feature name: $ac_feature" >&2
   { (exit 1); exit 1; }; }
    ac_feature=`echo $ac_feature | sed 's/[-.]/_/g'`
    eval enable_$ac_feature=\$ac_optarg ;;

  -exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
  | --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
  | --exec | --exe | --ex)
    ac_prev=exec_prefix ;;
  -exec-prefix=* | --exec_prefix=* | --exec-prefix=* | --exec-prefi=* \
  | --exec-pref=* | --exec-pre=* | --exec-pr=* | --exec-p=* | --exec-=* \
  | --exec=* | --exe=* | --ex=*)
    exec_prefix=$ac_optarg ;;

  -gas | --gas | --ga | --g)
    # Obsolete; use --with-gas.
    with_gas=yes ;;

  -help | --help | --hel | --he | -h)
    ac_init_help=long ;;
  -help=r* | --help=r* | --hel=r* | --he=r* | -hr*)
    ac_init_help=recursive ;;
  -help=s* | --help=s* | --hel=s* | --he=s* | -hs*)
    ac_init_help=short ;;

  -host | --host | --hos | --ho)
    ac_prev=host_alias ;;
  -host=* | --host=* | --hos=* | --ho=*)
    host_alias=$ac_optarg ;;

  -htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
    ac_prev=htmldir ;;
  -htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
  | --ht=*)
    htmldir=$ac_optarg ;;

  -includedir | --includedir | --includedi | --included | --include \
  | --includ | --inclu | --incl | --inc)
    ac_prev=includedir ;;
  -includedir=* | --includedir=* | --includedi=* | --included=* | --include=* \
  | --includ=* | --inclu=* | --incl=* | --inc=*)
    includedir=$ac_optarg ;;

  -infodir | --infodir | --infodi | --infod | --info | --inf)
    ac_prev=infodir ;;
  -infodir=* | --infodir=* | --infodi=* | --infod=* | --info=* | --inf=*)
    infodir=$ac_optarg ;;

  -libdir | --libdir | --libdi | --libd)
    ac_prev=libdir ;;
  -libdir=* | --libdir=* | --libdi=* | --libd=*)
    libdir=$ac_optarg ;;

  -libexecdir | --libexecdir | --libexecdi | --libexecd | --libexec \
  | --libexe | --libex | --libe)
    ac_prev=libexecdir ;;
  -libexecdir=* | --libexecdir=* | --libexecdi=* | --libexecd=* | --libexec=* \
  | --libexe=* | --libex=* | --libe=*)
    libexecdir=$ac_optarg ;;

  -localedir | --localedir | --localedi | --localed | --locale)
    ac_prev=localedir ;;
  -localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*)
    localedir=$ac_optarg ;;

  -localstatedir | --localstatedir | --localstatedi | --localstated \
  | --localstate | --localstat | --localsta | --localst | --locals)
    ac_prev=localstatedir ;;
  -localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
  | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
    localstatedir=$ac_optarg ;;

  -mandir | --mandir | --mandi | --mand | --man | --ma | --m)
    ac_prev=mandir ;;
  -mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*)
    mandir=$ac_optarg ;;

  -nfp | --nfp | --nf)
    # Obsolete; use --without-fp.
    with_fp=no ;;

  -no-create | --no-create | --no-creat | --no-crea | --no-cre \
  | --no-cr | --no-c | -n)
    no_create=yes ;;

  -no-recursion | --no-recursion | --no-recursio | --no-recursi \
  | --no-recurs | --no-recur | --no-recu | --no-rec | --no-re | --no-r)
    no_recursion=yes ;;

  -oldincludedir | --oldincludedir | --oldincludedi | --oldincluded \
  | --oldinclude | --oldinclud | --oldinclu | --oldincl | --oldinc \
  | --oldin | --oldi | --old | --ol | --o)
    ac_prev=oldincludedir ;;
  -oldincludedir=* | --oldincludedir=* | --oldincludedi=* | --oldincluded=* \
  | --oldinclude=* | --oldinclud=* | --oldinclu=* | --oldincl=* | --oldinc=* \
  | --oldin=* | --oldi=* | --old=* | --ol=* | --o=*)
    oldincludedir=$ac_optarg ;;

  -prefix | --prefix | --prefi | --pref | --pre | --pr | --p)
    ac_prev=prefix ;;
  -prefix=* | --prefix=* | --prefi=* | --pref=* | --pre=* | --pr=* | --p=*)
    prefix=$ac_optarg ;;

  -program-prefix | --program-prefix | --program-prefi | --program-pref \
  | --program-pre | --program-pr | --program-p)
    ac_prev=program_prefix ;;
  -program-prefix=* | --program-prefix=* | --program-prefi=* \
  | --program-pref=* | --program-pre=* | --program-pr=* | --program-p=*)
    program_prefix=$ac_optarg ;;

  -program-suffix | --program-suffix | --program-suffi | --program-suff \
  | --program-suf | --program-su | --program-s)
    ac_prev=program_suffix ;;
  -program-suffix=* | --program-suffix=* | --program-suffi=* \
  | --program-suff=* | --program-suf=* | --program-su=* | --program-s=*)
    program_suffix=$ac_optarg ;;

  -program-transform-name | --program-transform-name \
  | --program-transform-nam | --program-transform-na \
  | --program-transform-n | --program-transform- \
  | --program-transform | --program-transfor \
  | --program-transfo | --program-transf \
  | --program-trans | --program-tran \
  | --progr-tra | --program-tr | --program-t)
    ac_prev=program_transform_name ;;
  -program-transform-name=* | --program-transform-name=* \
  | --program-transform-nam=* | --program-transform-na=* \
  | --program-transform-n=* | --program-transform-=* \
  | --program-transform=* | --program-transfor=* \
  | --program-transfo=* | --program-transf=* \
  | --program-trans=* | --program-tran=* \
  | --progr-tra=* | --program-tr=* | --program-t=*)
    program_transform_name=$ac_optarg ;;

  -pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd)
    ac_prev=pdfdir ;;
  -pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*)
    pdfdir=$ac_optarg ;;

  -psdir | --psdir | --psdi | --psd | --ps)
    ac_prev=psdir ;;
  -psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
    psdir=$ac_optarg ;;

  -q | -quiet | --quiet | --quie | --qui | --qu | --q \
  | -silent | --silent | --silen | --sile | --sil)
    silent=yes ;;

  -sbindir | --sbindir | --sbindi | --sbind | --sbin | --sbi | --sb)
    ac_prev=sbindir ;;
  -sbindir=* | --sbindir=* | --sbindi=* | --sbind=* | --sbin=* \
  | --sbi=* | --sb=*)
    sbindir=$ac_optarg ;;

  -sharedstatedir | --sharedstatedir | --sharedstatedi \
  | --sharedstated | --sharedstate | --sharedstat | --sharedsta \
  | --sharedst | --shareds | --shared | --share | --shar \
  | --sha | --sh)
    ac_prev=sharedstatedir ;;
  -sharedstatedir=* | --sharedstatedir=* | --sharedstatedi=* \
  | --sharedstated=* | --sharedstate=* | --sharedstat=* | --sharedsta=* \
  | --sharedst=* | --shareds=* | --shared=* | --share=* | --shar=* \
  | --sha=* | --sh=*)
    sharedstatedir=$ac_optarg ;;

  -site | --site | --sit)
    ac_prev=site ;;
  -site=* | --site=* | --sit=*)
    site=$ac_optarg ;;

  -srcdir | --srcdir | --srcdi | --srcd | --src | --sr)
    ac_prev=srcdir ;;
  -srcdir=* | --srcdir=* | --srcdi=* | --srcd=* | --src=* | --sr=*)
    srcdir=$ac_optarg ;;

  -sysconfdir | --sysconfdir | --sysconfdi | --sysconfd | --sysconf \
  | --syscon | --sysco | --sysc | --sys | --sy)
    ac_prev=sysconfdir ;;
  -sysconfdir=* | --sysconfdir=* | --sysconfdi=* | --sysconfd=* | --sysconf=* \
  | --syscon=* | --sysco=* | --sysc=* | --sys=* | --sy=*)
    sysconfdir=$ac_optarg ;;

  -target | --target | --targe | --targ | --tar | --ta | --t)
    ac_prev=target_alias ;;
  -target=* | --target=* | --targe=* | --targ=* | --tar=* | --ta=* | --t=*)
    target_alias=$ac_optarg ;;

  -v | -verbose | --verbose | --verbos | --verbo | --verb)
    verbose=yes ;;

  -version | --version | --versio | --versi | --vers | -V)
    ac_init_version=: ;;

  -with-* | --with-*)
    ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
    # Reject names that are not valid shell variable names.
    expr "x$ac_package" : ".*[^-._$as_cr_alnum]" >/dev/null &&
      { echo "$as_me: error: invalid package name: $ac_package" >&2
   { (exit 1); exit 1; }; }
    ac_package=`echo $ac_package | sed 's/[-.]/_/g'`
    eval with_$ac_package=\$ac_optarg ;;

  -without-* | --without-*)
    ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
    # Reject names that are not valid shell variable names.
    expr "x$ac_package" : ".*[^-._$as_cr_alnum]" >/dev/null &&
      { echo "$as_me: error: invalid package name: $ac_package" >&2
   { (exit 1); exit 1; }; }
    ac_package=`echo $ac_package | sed 's/[-.]/_/g'`
    eval with_$ac_package=no ;;

  --x)
    # Obsolete; use --with-x.
    with_x=yes ;;

  -x-includes | --x-includes | --x-include | --x-includ | --x-inclu \
  | --x-incl | --x-inc | --x-in | --x-i)
    ac_prev=x_includes ;;
  -x-includes=* | --x-includes=* | --x-include=* | --x-includ=* | --x-inclu=* \
  | --x-incl=* | --x-inc=* | --x-in=* | --x-i=*)
    x_includes=$ac_optarg ;;

  -x-libraries | --x-libraries | --x-librarie | --x-librari \
  | --x-librar | --x-libra | --x-libr | --x-lib | --x-li | --x-l)
    ac_prev=x_libraries ;;
  -x-libraries=* | --x-libraries=* | --x-librarie=* | --x-librari=* \
  | --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*)
    x_libraries=$ac_optarg ;;

  -*) { echo "$as_me: error: unrecognized option: $ac_option
Try \`$0 --help' for more information." >&2
   { (exit 1); exit 1; }; }
    ;;

  *=*)
    ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
    # Reject names that are not valid shell variable names.
    expr "x$ac_envvar" : ".*[^_$as_cr_alnum]" >/dev/null &&
      { echo "$as_me: error: invalid variable name: $ac_envvar" >&2
   { (exit 1); exit 1; }; }
    eval $ac_envvar=\$ac_optarg
    export $ac_envvar ;;

  *)
    # FIXME: should be removed in autoconf 3.0.
    echo "$as_me: WARNING: you should use --build, --host, --target" >&2
    expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null &&
      echo "$as_me: WARNING: invalid host type: $ac_option" >&2
    : ${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}
    ;;

  esac
done

if test -n "$ac_prev"; then
  ac_option=--`echo $ac_prev | sed 's/_/-/g'`
  { echo "$as_me: error: missing argument to $ac_option" >&2
   { (exit 1); exit 1; }; }
fi

# Be sure to have absolute directory names.
for ac_var in	exec_prefix prefix bindir sbindir libexecdir datarootdir \
		datadir sysconfdir sharedstatedir localstatedir includedir \
		oldincludedir docdir infodir htmldir dvidir pdfdir psdir \
		libdir localedir mandir
do
  eval ac_val=\$$ac_var
  case $ac_val in
    [\\/$]* | ?:[\\/]* )  continue;;
    NONE | '' ) case $ac_var in *prefix ) continue;; esac;;
  esac
  { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
   { (exit 1); exit 1; }; }
done

# There might be people who depend on the old broken behavior: `$host'
# used to hold the argument of --host etc.
# FIXME: To remove some day.
build=$build_alias
host=$host_alias
target=$target_alias

# FIXME: To remove some day.
if test "x$host_alias" != x; then
  if test "x$build_alias" = x; then
    cross_compiling=maybe
    echo "$as_me: WARNING: If you wanted to set the --build type, don't use --host.
    If a cross compiler is detected then cross compile mode will be used." >&2
  elif test "x$build_alias" != "x$host_alias"; then
    cross_compiling=yes
  fi
fi

ac_tool_prefix=
test -n "$host_alias" && ac_tool_prefix=$host_alias-

test "$silent" = yes && exec 6>/dev/null


ac_pwd=`pwd` && test -n "$ac_pwd" &&
ac_ls_di=`ls -di .` &&
ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
  { echo "$as_me: error: Working directory cannot be determined" >&2
   { (exit 1); exit 1; }; }
test "X$ac_ls_di" = "X$ac_pwd_ls_di" ||
  { echo "$as_me: error: pwd does not report name of working directory" >&2
   { (exit 1); exit 1; }; }


# Find the source files, if location was not specified.
if test -z "$srcdir"; then
  ac_srcdir_defaulted=yes
  # Try the directory containing this script, then the parent directory.
  ac_confdir=`$as_dirname -- "$0" ||
$as_expr X"$0" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
	 X"$0" : 'X\(//\)[^/]' \| \
	 X"$0" : 'X\(//\)$' \| \
	 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
echo X"$0" |
    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
	    s//\1/
	    q
	  }
	  /^X\(\/\/\)[^/].*/{
	    s//\1/
	    q
	  }
	  /^X\(\/\/\)$/{
	    s//\1/
	    q
	  }
	  /^X\(\/\).*/{
	    s//\1/
	    q
	  }
	  s/.*/./; q'`
  srcdir=$ac_confdir
  if test ! -r "$srcdir/$ac_unique_file"; then
    srcdir=..
  fi
else
  ac_srcdir_defaulted=no
fi
if test ! -r "$srcdir/$ac_unique_file"; then
  test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .."
  { echo "$as_me: error: cannot find sources ($ac_unique_file) in $srcdir" >&2
   { (exit 1); exit 1; }; }
fi
ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work"
ac_abs_confdir=`(
	cd "$srcdir" && test -r "./$ac_unique_file" || { echo "$as_me: error: $ac_msg" >&2
   { (exit 1); exit 1; }; }
	pwd)`
# When building in place, set srcdir=.
if test "$ac_abs_confdir" = "$ac_pwd"; then
  srcdir=.
fi
# Remove unnecessary trailing slashes from srcdir.
# Double slashes in file names in object file debugging info
# mess up M-x gdb in Emacs.
case $srcdir in
*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
esac
for ac_var in $ac_precious_vars; do
  eval ac_env_${ac_var}_set=\${${ac_var}+set}
  eval ac_env_${ac_var}_value=\$${ac_var}
  eval ac_cv_env_${ac_var}_set=\${${ac_var}+set}
  eval ac_cv_env_${ac_var}_value=\$${ac_var}
done

#
# Report the --help message.
#
if test "$ac_init_help" = "long"; then
  # Omit some internal or obsolete options to make the list less imposing.
  # This message is too long to be a string in the A/UX 3.1 sh.
  cat <<_ACEOF
\`configure' configures libSBML 3.3.2 to adapt to many kinds of systems.

Usage: $0 [OPTION]... [VAR=VALUE]...

To assign environment variables (e.g., CC, CFLAGS...), specify them as
VAR=VALUE.  See below for descriptions of some of the useful variables.

Defaults for the options are specified in brackets.

Configuration:
  -h, --help              display this help and exit
      --help=short        display options specific to this package
      --help=recursive    display the short help of all the included packages
  -V, --version           display version information and exit
  -q, --quiet, --silent   do not print \`checking...' messages
      --cache-file=FILE   cache test results in FILE [disabled]
  -C, --config-cache      alias for \`--cache-file=config.cache'
  -n, --no-create         do not create output files
      --srcdir=DIR        find the sources in DIR [configure dir or \`..']

Installation directories:
  --prefix=PREFIX         install architecture-independent files in PREFIX
			  [$ac_default_prefix]
  --exec-prefix=EPREFIX   install architecture-dependent files in EPREFIX
			  [PREFIX]

By default, \`make install' will install all the files in
\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc.  You can specify
an installation prefix other than \`$ac_default_prefix' using \`--prefix',
for instance \`--prefix=\$HOME'.

For better control, use the options below.

Fine tuning of the installation directories:
  --bindir=DIR           user executables [EPREFIX/bin]
  --sbindir=DIR          system admin executables [EPREFIX/sbin]
  --libexecdir=DIR       program executables [EPREFIX/libexec]
  --sysconfdir=DIR       read-only single-machine data [PREFIX/etc]
  --sharedstatedir=DIR   modifiable architecture-independent data [PREFIX/com]
  --localstatedir=DIR    modifiable single-machine data [PREFIX/var]
  --libdir=DIR           object code libraries [EPREFIX/lib]
  --includedir=DIR       C header files [PREFIX/include]
  --oldincludedir=DIR    C header files for non-gcc [/usr/include]
  --datarootdir=DIR      read-only arch.-independent data root [PREFIX/share]
  --datadir=DIR          read-only architecture-independent data [DATAROOTDIR]
  --infodir=DIR          info documentation [DATAROOTDIR/info]
  --localedir=DIR        locale-dependent data [DATAROOTDIR/locale]
  --mandir=DIR           man documentation [DATAROOTDIR/man]
  --docdir=DIR           documentation root [DATAROOTDIR/doc/libsbml]
  --htmldir=DIR          html documentation [DOCDIR]
  --dvidir=DIR           dvi documentation [DOCDIR]
  --pdfdir=DIR           pdf documentation [DOCDIR]
  --psdir=DIR            ps documentation [DOCDIR]
_ACEOF

  cat <<\_ACEOF

System types:
  --build=BUILD     configure for building on BUILD [guessed]
  --host=HOST       cross-compile to build programs to run on HOST [BUILD]
_ACEOF
fi

if test -n "$ac_init_help"; then
  case $ac_init_help in
     short | recursive ) echo "Configuration of libSBML 3.3.2:";;
   esac
  cat <<\_ACEOF

Optional Features:
  --disable-FEATURE       do not include FEATURE (same as --enable-FEATURE=no)
  --enable-FEATURE[=ARG]  include FEATURE [ARG=yes]
  --enable-layout=ARG     Build the SBML layout extension (default=no)
  --enable-compression=ARG
                          Enable zlib/bzip2 compression if required libs
                          detected, otherwise disabled (default=yes)
  --enable-universal-binary=ARG
                          Generate universal binaries on MacOSX [default=no]
                          ("-arch i386 -arch ppc" used when enabled without
                          ARG)

Optional Packages:
  --with-PACKAGE[=ARG]    use PACKAGE [ARG=yes]
  --without-PACKAGE       do not use PACKAGE (same as --with-PACKAGE=no)
  --with-swig=PREFIX      Regenerate SWIG wrappers [default=no]
  --with-python=PREFIX    Generate Python interface library [default=no]
  --with-perl=PREFIX      Generate Perl interface library [default=no]
  --with-java=PREFIX      Generate Java interface library [default=no]
  --with-matlab=PREFIX    Generate MATLAB interface library [default=no]
  --with-octave=PREFIX    Generate Octave interface library [default=no]
  --with-ruby=PREFIX      Generate Ruby interface library [default=no]
  --with-csharp=PREFIX    Generate CSharp interface library [default=no]
  --with-cil-interpreter=path
                          Set location of CIL interpreter for CSharp
                          [default=autodetect]
  --with-csharp-compiler=path
                          Set location of CSharp compiler
                          [default=autodetect]
  --with-doxygen=PREFIX   Specify path to doxygen [default=autodetect]
  --with-expat=PREFIX     Use Expat XML Library [default=no]
  --with-xerces=PREFIX    Use the Xerces XML Library [default=yes]
  --with-libxml=PREFIX    Use the libxml2 XML library [default=no]
  --with-check=PREFIX     Use the libcheck unit testing library [default=no]
  --with-zlib=PREFIX      Enable reading/writing files compressed with zlib
                          [default=autodetect]
  --without-zlib-version-check
                          Disable zlib version check
  --with-bzip2=PREFIX     Enable reading/writing files compressed with bzip2
                          [default=autodetect]

Some influential environment variables:
  CXX         C++ compiler command
  CXXFLAGS    C++ compiler flags
  LDFLAGS     linker flags, e.g. -L<lib dir> if you have libraries in a
              nonstandard directory <lib dir>
  LIBS        libraries to pass to the linker, e.g. -l<library>
  CPPFLAGS    C/C++/Objective C preprocessor flags, e.g. -I<include dir> if
              you have headers in a nonstandard directory <include dir>
  CC          C compiler command
  CFLAGS      C compiler flags
  CPP         C preprocessor
  PYTHON
  PERL
  RUBY
  CXXCPP      C++ preprocessor
  UNIVBINARY

Use these variables to override the choices made by `configure' or to help
it to find libraries and programs with nonstandard names/locations.

Report bugs to <libsbml-team@caltech.edu>.
_ACEOF
ac_status=$?
fi

if test "$ac_init_help" = "recursive"; then
  # If there are subdirs, report their specific --help.
  for ac_dir in : $ac_subdirs_all; do test "x$ac_dir" = x: && continue
    test -d "$ac_dir" || continue
    ac_builddir=.

case "$ac_dir" in
.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
*)
  ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
  # A ".." for each directory in $ac_dir_suffix.
  ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
  case $ac_top_builddir_sub in
  "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
  *)  ac_top_build_prefix=$ac_top_builddir_sub/ ;;
  esac ;;
esac
ac_abs_top_builddir=$ac_pwd
ac_abs_builddir=$ac_pwd$ac_dir_suffix
# for backward compatibility:
ac_top_builddir=$ac_top_build_prefix

case $srcdir in
  .)  # We are building in place.
    ac_srcdir=.
    ac_top_srcdir=$ac_top_builddir_sub
    ac_abs_top_srcdir=$ac_pwd ;;
  [\\/]* | ?:[\\/]* )  # Absolute name.
    ac_srcdir=$srcdir$ac_dir_suffix;
    ac_top_srcdir=$srcdir
    ac_abs_top_srcdir=$srcdir ;;
  *) # Relative name.
    ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
    ac_top_srcdir=$ac_top_build_prefix$srcdir
    ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
esac
ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix

    cd "$ac_dir" || { ac_status=$?; continue; }
    # Check for guested configure.
    if test -f "$ac_srcdir/configure.gnu"; then
      echo &&
      $SHELL "$ac_srcdir/configure.gnu" --help=recursive
    elif test -f "$ac_srcdir/configure"; then
      echo &&
      $SHELL "$ac_srcdir/configure" --help=recursive
    else
      echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
    fi || ac_status=$?
    cd "$ac_pwd" || { ac_status=$?; break; }
  done
fi

test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
  cat <<\_ACEOF
libSBML configure 3.3.2
generated by GNU Autoconf 2.61

Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
This configure script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it.
_ACEOF
  exit
fi
cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by libSBML $as_me 3.3.2, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  $ $0 $@

_ACEOF
exec 5>>config.log
{
cat <<_ASUNAME
## --------- ##
## Platform. ##
## --------- ##

hostname = `(hostname || uname -n) 2>/dev/null | sed 1q`
uname -m = `(uname -m) 2>/dev/null || echo unknown`
uname -r = `(uname -r) 2>/dev/null || echo unknown`
uname -s = `(uname -s) 2>/dev/null || echo unknown`
uname -v = `(uname -v) 2>/dev/null || echo unknown`

/usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null || echo unknown`
/bin/uname -X     = `(/bin/uname -X) 2>/dev/null     || echo unknown`

/bin/arch              = `(/bin/arch) 2>/dev/null              || echo unknown`
/usr/bin/arch -k       = `(/usr/bin/arch -k) 2>/dev/null       || echo unknown`
/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
/usr/bin/hostinfo      = `(/usr/bin/hostinfo) 2>/dev/null      || echo unknown`
/bin/machine           = `(/bin/machine) 2>/dev/null           || echo unknown`
/usr/bin/oslevel       = `(/usr/bin/oslevel) 2>/dev/null       || echo unknown`
/bin/universe          = `(/bin/universe) 2>/dev/null          || echo unknown`

_ASUNAME

as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  echo "PATH: $as_dir"
done
IFS=$as_save_IFS

} >&5

cat >&5 <<_ACEOF


## ----------- ##
## Core tests. ##
## ----------- ##

_ACEOF


# Keep a trace of the command line.
# Strip out --no-create and --no-recursion so they do not pile up.
# Strip out --silent because we don't want to record it for future runs.
# Also quote any args containing shell meta-characters.
# Make two passes to allow for proper duplicate-argument suppression.
ac_configure_args=
ac_configure_args0=
ac_configure_args1=
ac_must_keep_next=false
for ac_pass in 1 2
do
  for ac_arg
  do
    case $ac_arg in
    -no-create | --no-c* | -n | -no-recursion | --no-r*) continue ;;
    -q | -quiet | --quiet | --quie | --qui | --qu | --q \
    | -silent | --silent | --silen | --sile | --sil)
      continue ;;
    *\'*)
      ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
    esac
    case $ac_pass in
    1) ac_configure_args0="$ac_configure_args0 '$ac_arg'" ;;
    2)
      ac_configure_args1="$ac_configure_args1 '$ac_arg'"
      if test $ac_must_keep_next = true; then
	ac_must_keep_next=false # Got value, back to normal.
      else
	case $ac_arg in
	  *=* | --config-cache | -C | -disable-* | --disable-* \
	  | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \
	  | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \
	  | -with-* | --with-* | -without-* | --without-* | --x)
	    case "$ac_configure_args0 " in
	      "$ac_configure_args1"*" '$ac_arg' "* ) continue ;;
	    esac
	    ;;
	  -* ) ac_must_keep_next=true ;;
	esac
      fi
      ac_configure_args="$ac_configure_args '$ac_arg'"
      ;;
    esac
  done
done
$as_unset ac_configure_args0 || test "${ac_configure_args0+set}" != set || { ac_configure_args0=; export ac_configure_args0; }
$as_unset ac_configure_args1 || test "${ac_configure_args1+set}" != set || { ac_configure_args1=; export ac_configure_args1; }

# When interrupted or exit'd, cleanup temporary files, and complete
# config.log.  We remove comments because anyway the quotes in there
# would cause problems or look ugly.
# WARNING: Use '\'' to represent an apostrophe within the trap.
# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug.
trap 'exit_status=$?
  # Save into config.log some information that might help in debugging.
  {
    echo

    cat <<\_ASBOX
## ---------------- ##
## Cache variables. ##
## ---------------- ##
_ASBOX
    echo
    # The following way of writing the cache mishandles newlines in values,
(
  for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do
    eval ac_val=\$$ac_var
    case $ac_val in #(
    *${as_nl}*)
      case $ac_var in #(
      *_cv_*) { echo "$as_me:$LINENO: WARNING: Cache variable $ac_var contains a newline." >&5
echo "$as_me: WARNING: Cache variable $ac_var contains a newline." >&2;} ;;
      esac
      case $ac_var in #(
      _ | IFS | as_nl) ;; #(
      *) $as_unset $ac_var ;;
      esac ;;
    esac
  done
  (set) 2>&1 |
    case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #(
    *${as_nl}ac_space=\ *)
      sed -n \
	"s/'\''/'\''\\\\'\'''\''/g;
	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p"
      ;; #(
    *)
      sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
      ;;
    esac |
    sort
)
    echo

    cat <<\_ASBOX
## ----------------- ##
## Output variables. ##
## ----------------- ##
_ASBOX
    echo
    for ac_var in $ac_subst_vars
    do
      eval ac_val=\$$ac_var
      case $ac_val in
      *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
      esac
      echo "$ac_var='\''$ac_val'\''"
    done | sort
    echo

    if test -n "$ac_subst_files"; then
      cat <<\_ASBOX
## ------------------- ##
## File substitutions. ##
## ------------------- ##
_ASBOX
      echo
      for ac_var in $ac_subst_files
      do
	eval ac_val=\$$ac_var
	case $ac_val in
	*\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
	esac
	echo "$ac_var='\''$ac_val'\''"
      done | sort
      echo
    fi

    if test -s confdefs.h; then
      cat <<\_ASBOX
## ----------- ##
## confdefs.h. ##
## ----------- ##
_ASBOX
      echo
      cat confdefs.h
      echo
    fi
    test "$ac_signal" != 0 &&
      echo "$as_me: caught signal $ac_signal"
    echo "$as_me: exit $exit_status"
  } >&5
  rm -f core *.core core.conftest.* &&
    rm -f -r conftest* confdefs* conf$$* $ac_clean_files &&
    exit $exit_status
' 0
for ac_signal in 1 2 13 15; do
  trap 'ac_signal='$ac_signal'; { (exit 1); exit 1; }' $ac_signal
done
ac_signal=0

# confdefs.h avoids OS command line length limits that DEFS can exceed.
rm -f -r conftest* confdefs.h

# Predefined preprocessor variables.

cat >>confdefs.h <<_ACEOF
#define PACKAGE_NAME "$PACKAGE_NAME"
_ACEOF


cat >>confdefs.h <<_ACEOF
#define PACKAGE_TARNAME "$PACKAGE_TARNAME"
_ACEOF


cat >>confdefs.h <<_ACEOF
#define PACKAGE_VERSION "$PACKAGE_VERSION"
_ACEOF


cat >>confdefs.h <<_ACEOF
#define PACKAGE_STRING "$PACKAGE_STRING"
_ACEOF


cat >>confdefs.h <<_ACEOF
#define PACKAGE_BUGREPORT "$PACKAGE_BUGREPORT"
_ACEOF


# Let the site file select an alternate cache file if it wants to.
# Prefer explicitly selected file to automatically selected ones.
if test -n "$CONFIG_SITE"; then
  set x "$CONFIG_SITE"
elif test "x$prefix" != xNONE; then
  set x "$prefix/share/config.site" "$prefix/etc/config.site"
else
  set x "$ac_default_prefix/share/config.site" \
	"$ac_default_prefix/etc/config.site"
fi
shift
for ac_site_file
do
  if test -r "$ac_site_file"; then
    { echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
echo "$as_me: loading site script $ac_site_file" >&6;}
    sed 's/^/| /' "$ac_site_file" >&5
    . "$ac_site_file"
  fi
done

if test -r "$cache_file"; then
  # Some versions of bash will fail to source /dev/null (special
  # files actually), so we avoid doing that.
  if test -f "$cache_file"; then
    { echo "$as_me:$LINENO: loading cache $cache_file" >&5
echo "$as_me: loading cache $cache_file" >&6;}
    case $cache_file in
      [\\/]* | ?:[\\/]* ) . "$cache_file";;
      *)                      . "./$cache_file";;
    esac
  fi
else
  { echo "$as_me:$LINENO: creating cache $cache_file" >&5
echo "$as_me: creating cache $cache_file" >&6;}
  >$cache_file
fi

# Check that the precious variables saved in the cache have kept the same
# value.
ac_cache_corrupted=false
for ac_var in $ac_precious_vars; do
  eval ac_old_set=\$ac_cv_env_${ac_var}_set
  eval ac_new_set=\$ac_env_${ac_var}_set
  eval ac_old_val=\$ac_cv_env_${ac_var}_value
  eval ac_new_val=\$ac_env_${ac_var}_value
  case $ac_old_set,$ac_new_set in
    set,)
      { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
      ac_cache_corrupted=: ;;
    ,set)
      { echo "$as_me:$LINENO: error: \`$ac_var' was not set in the previous run" >&5
echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
      ac_cache_corrupted=: ;;
    ,);;
    *)
      if test "x$ac_old_val" != "x$ac_new_val"; then
	{ echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
	{ echo "$as_me:$LINENO:   former value:  $ac_old_val" >&5
echo "$as_me:   former value:  $ac_old_val" >&2;}
	{ echo "$as_me:$LINENO:   current value: $ac_new_val" >&5
echo "$as_me:   current value: $ac_new_val" >&2;}
	ac_cache_corrupted=:
      fi;;
  esac
  # Pass precious variables to config.status.
  if test "$ac_new_set" = set; then
    case $ac_new_val in
    *\'*) ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
    *) ac_arg=$ac_var=$ac_new_val ;;
    esac
    case " $ac_configure_args " in
      *" '$ac_arg' "*) ;; # Avoid dups.  Use of quotes ensures accuracy.
      *) ac_configure_args="$ac_configure_args '$ac_arg'" ;;
    esac
  fi
done
if $ac_cache_corrupted; then
  { echo "$as_me:$LINENO: error: changes in the environment can compromise the build" >&5
echo "$as_me: error: changes in the environment can compromise the build" >&2;}
  { { echo "$as_me:$LINENO: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&5
echo "$as_me: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&2;}
   { (exit 1); exit 1; }; }
fi

























ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu


ac_aux_dir=
for ac_dir in config "$srcdir"/config; do
  if test -f "$ac_dir/install-sh"; then
    ac_aux_dir=$ac_dir
    ac_install_sh="$ac_aux_dir/install-sh -c"
    break
  elif test -f "$ac_dir/install.sh"; then
    ac_aux_dir=$ac_dir
    ac_install_sh="$ac_aux_dir/install.sh -c"
    break
  elif test -f "$ac_dir/shtool"; then
    ac_aux_dir=$ac_dir
    ac_install_sh="$ac_aux_dir/shtool install -c"
    break
  fi
done
if test -z "$ac_aux_dir"; then
  { { echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in config \"$srcdir\"/config" >&5
echo "$as_me: error: cannot find install-sh or install.sh in config \"$srcdir\"/config" >&2;}
   { (exit 1); exit 1; }; }
fi

# These three variables are undocumented and unsupported,
# and are intended to be withdrawn in a future Autoconf release.
# They can cause serious problems if a builder's source tree is in a directory
# whose full name contains unusual characters.
ac_config_guess="$SHELL $ac_aux_dir/config.guess"  # Please don't use this var.
ac_config_sub="$SHELL $ac_aux_dir/config.sub"  # Please don't use this var.
ac_configure="$SHELL $ac_aux_dir/configure"  # Please don't use this var.









ac_config_headers="$ac_config_headers src/common/libsbml-config-unix.h"

ac_config_headers="$ac_config_headers src/common/libsbml-package.h"


LIBSBML_VERSION_NUMERIC=30302









# Check whether --enable-layout was given.
if test "${enable_layout+set}" = set; then
  enableval=$enable_layout; enable_layout=$enableval
else
  enable_layout=no
fi


if test "$enable_layout" != no; then

cat >>confdefs.h <<\_ACEOF
#define USE_LAYOUT 1
_ACEOF

  USE_LAYOUT=1

fi

# Check whether --enable-compression was given.
if test "${enable_compression+set}" = set; then
  enableval=$enable_compression; enable_compression=$enableval
else
  enable_compression=yes
fi


if test "$enable_compression" != no; then

cat >>confdefs.h <<\_ACEOF
#define USE_COMPRESSION 1
_ACEOF

  USE_COMPRESSION=1

fi



# Make sure we can run config.sub.
$SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 ||
  { { echo "$as_me:$LINENO: error: cannot run $SHELL $ac_aux_dir/config.sub" >&5
echo "$as_me: error: cannot run $SHELL $ac_aux_dir/config.sub" >&2;}
   { (exit 1); exit 1; }; }

{ echo "$as_me:$LINENO: checking build system type" >&5
echo $ECHO_N "checking build system type... $ECHO_C" >&6; }
if test "${ac_cv_build+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_build_alias=$build_alias
test "x$ac_build_alias" = x &&
  ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
test "x$ac_build_alias" = x &&
  { { echo "$as_me:$LINENO: error: cannot guess build type; you must specify one" >&5
echo "$as_me: error: cannot guess build type; you must specify one" >&2;}
   { (exit 1); exit 1; }; }
ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
  { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&5
echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&2;}
   { (exit 1); exit 1; }; }

fi
{ echo "$as_me:$LINENO: result: $ac_cv_build" >&5
echo "${ECHO_T}$ac_cv_build" >&6; }
case $ac_cv_build in
*-*-*) ;;
*) { { echo "$as_me:$LINENO: error: invalid value of canonical build" >&5
echo "$as_me: error: invalid value of canonical build" >&2;}
   { (exit 1); exit 1; }; };;
esac
build=$ac_cv_build
ac_save_IFS=$IFS; IFS='-'
set x $ac_cv_build
shift
build_cpu=$1
build_vendor=$2
shift; shift
# Remember, the first character of IFS is used to create $*,
# except with old shells:
build_os=$*
IFS=$ac_save_IFS
case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac


{ echo "$as_me:$LINENO: checking host system type" >&5
echo $ECHO_N "checking host system type... $ECHO_C" >&6; }
if test "${ac_cv_host+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test "x$host_alias" = x; then
  ac_cv_host=$ac_cv_build
else
  ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
    { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&5
echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&2;}
   { (exit 1); exit 1; }; }
fi

fi
{ echo "$as_me:$LINENO: result: $ac_cv_host" >&5
echo "${ECHO_T}$ac_cv_host" >&6; }
case $ac_cv_host in
*-*-*) ;;
*) { { echo "$as_me:$LINENO: error: invalid value of canonical host" >&5
echo "$as_me: error: invalid value of canonical host" >&2;}
   { (exit 1); exit 1; }; };;
esac
host=$ac_cv_host
ac_save_IFS=$IFS; IFS='-'
set x $ac_cv_host
shift
host_cpu=$1
host_vendor=$2
shift; shift
# Remember, the first character of IFS is used to create $*,
# except with old shells:
host_os=$*
IFS=$ac_save_IFS
case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac



case $host_os in
  *linux*)
    CPPFLAGS="-DLINUX $CPPFLAGS"
    HOST_TYPE="linux"
    SHAREDLIBEXT="so"
    ;;

  *solaris*)
    CPPFLAGS="-DSOLARIS $CPPFLAGS"
    HOST_TYPE="solaris"
    SHAREDLIBEXT="so"
    ;;

  *cygwin*)
    CPPFLAGS="-DWIN32 -DCYGWIN -DLIBSBML_EXPORTS $CPPFLAGS"
    HOST_TYPE="cygwin"
    SHAREDLIBEXT="dll"
    ;;

  *darwin*)
    CPPFLAGS="-DMACOSX $CPPFLAGS"
    HOST_TYPE="darwin"
    SHAREDLIBEXT="dylib"
    ;;

  *aix*)
    CPPFLAGS="-DAIX $CPPFLAGS"
    HOST_TYPE="aix"
    SHAREDLIBEXT="a"
    ;;

  *freebsd*)
    CPPFLAGS="-DFREEBSD $CPPFLAGS"
    HOST_TYPE="freebsd"
    SHAREDLIBEXT="so"
    ;;

esac






  cat >>confdefs.h <<\_ACEOF
#define RUN_LDPATH 1
_ACEOF



  case $host in
  *darwin*)
    RUN_LDPATH="$DYLD_LIBRARY_PATH"
    ;;
  *)
    RUN_LDPATH="$LD_LIBRARY_PATH"
    ;;
  esac






ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
if test -z "$CXX"; then
  if test -n "$CCC"; then
    CXX=$CCC
  else
    if test -n "$ac_tool_prefix"; then
  for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
  do
    # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
set dummy $ac_tool_prefix$ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_CXX+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$CXX"; then
  ac_cv_prog_CXX="$CXX" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
CXX=$ac_cv_prog_CXX
if test -n "$CXX"; then
  { echo "$as_me:$LINENO: result: $CXX" >&5
echo "${ECHO_T}$CXX" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    test -n "$CXX" && break
  done
fi
if test -z "$CXX"; then
  ac_ct_CXX=$CXX
  for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_ac_ct_CXX+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$ac_ct_CXX"; then
  ac_cv_prog_ac_ct_CXX="$ac_ct_CXX" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_ac_ct_CXX="$ac_prog"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
ac_ct_CXX=$ac_cv_prog_ac_ct_CXX
if test -n "$ac_ct_CXX"; then
  { echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
echo "${ECHO_T}$ac_ct_CXX" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$ac_ct_CXX" && break
done

  if test "x$ac_ct_CXX" = x; then
    CXX="g++"
  else
    case $cross_compiling:$ac_tool_warned in
yes:)
{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
whose name does not start with the host triplet.  If you think this
configuration is useful to you, please write to autoconf@gnu.org." >&5
echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
whose name does not start with the host triplet.  If you think this
configuration is useful to you, please write to autoconf@gnu.org." >&2;}
ac_tool_warned=yes ;;
esac
    CXX=$ac_ct_CXX
  fi
fi

  fi
fi
# Provide some information about the compiler.
echo "$as_me:$LINENO: checking for C++ compiler version" >&5
ac_compiler=`set X $ac_compile; echo $2`
{ (ac_try="$ac_compiler --version >&5"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compiler --version >&5") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }
{ (ac_try="$ac_compiler -v >&5"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compiler -v >&5") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }
{ (ac_try="$ac_compiler -V >&5"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compiler -V >&5") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }

cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{

  ;
  return 0;
}
_ACEOF
ac_clean_files_save=$ac_clean_files
ac_clean_files="$ac_clean_files a.out a.exe b.out"
# Try to create an executable without -o first, disregard a.out.
# It will help us diagnose broken compilers, and finding out an intuition
# of exeext.
{ echo "$as_me:$LINENO: checking for C++ compiler default output file name" >&5
echo $ECHO_N "checking for C++ compiler default output file name... $ECHO_C" >&6; }
ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
#
# List of possible output files, starting from the most likely.
# The algorithm is not robust to junk in `.', hence go to wildcards (a.*)
# only as a last resort.  b.out is created by i960 compilers.
ac_files='a_out.exe a.exe conftest.exe a.out conftest a.* conftest.* b.out'
#
# The IRIX 6 linker writes into existing files which may not be
# executable, retaining their permissions.  Remove them first so a
# subsequent execution test works.
ac_rmfiles=
for ac_file in $ac_files
do
  case $ac_file in
    *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
    * ) ac_rmfiles="$ac_rmfiles $ac_file";;
  esac
done
rm -f $ac_rmfiles

if { (ac_try="$ac_link_default"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link_default") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; then
  # Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
# in a Makefile.  We should not override ac_cv_exeext if it was cached,
# so that the user can short-circuit this test for compilers unknown to
# Autoconf.
for ac_file in $ac_files ''
do
  test -f "$ac_file" || continue
  case $ac_file in
    *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj )
	;;
    [ab].out )
	# We found the default executable, but exeext='' is most
	# certainly right.
	break;;
    *.* )
        if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
	then :; else
	   ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
	fi
	# We set ac_cv_exeext here because the later test for it is not
	# safe: cross compilers may not add the suffix if given an `-o'
	# argument, so we may need to know it at that point already.
	# Even if this section looks crufty: it has the advantage of
	# actually working.
	break;;
    * )
	break;;
  esac
done
test "$ac_cv_exeext" = no && ac_cv_exeext=

else
  ac_file=''
fi

{ echo "$as_me:$LINENO: result: $ac_file" >&5
echo "${ECHO_T}$ac_file" >&6; }
if test -z "$ac_file"; then
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

{ { echo "$as_me:$LINENO: error: C++ compiler cannot create executables
See \`config.log' for more details." >&5
echo "$as_me: error: C++ compiler cannot create executables
See \`config.log' for more details." >&2;}
   { (exit 77); exit 77; }; }
fi

ac_exeext=$ac_cv_exeext

# Check that the compiler produces executables we can run.  If not, either
# the compiler is broken, or we cross compile.
{ echo "$as_me:$LINENO: checking whether the C++ compiler works" >&5
echo $ECHO_N "checking whether the C++ compiler works... $ECHO_C" >&6; }
# FIXME: These cross compiler hacks should be removed for Autoconf 3.0
# If not cross compiling, check that we can run a simple program.
if test "$cross_compiling" != yes; then
  if { ac_try='./$ac_file'
  { (case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_try") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
    cross_compiling=no
  else
    if test "$cross_compiling" = maybe; then
	cross_compiling=yes
    else
	{ { echo "$as_me:$LINENO: error: cannot run C++ compiled programs.
If you meant to cross compile, use \`--host'.
See \`config.log' for more details." >&5
echo "$as_me: error: cannot run C++ compiled programs.
If you meant to cross compile, use \`--host'.
See \`config.log' for more details." >&2;}
   { (exit 1); exit 1; }; }
    fi
  fi
fi
{ echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }

rm -f a.out a.exe conftest$ac_cv_exeext b.out
ac_clean_files=$ac_clean_files_save
# Check that the compiler produces executables we can run.  If not, either
# the compiler is broken, or we cross compile.
{ echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
echo $ECHO_N "checking whether we are cross compiling... $ECHO_C" >&6; }
{ echo "$as_me:$LINENO: result: $cross_compiling" >&5
echo "${ECHO_T}$cross_compiling" >&6; }

{ echo "$as_me:$LINENO: checking for suffix of executables" >&5
echo $ECHO_N "checking for suffix of executables... $ECHO_C" >&6; }
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; then
  # If both `conftest.exe' and `conftest' are `present' (well, observable)
# catch `conftest.exe'.  For instance with Cygwin, `ls conftest' will
# work properly (i.e., refer to `conftest.exe'), while it won't with
# `rm'.
for ac_file in conftest.exe conftest conftest.*; do
  test -f "$ac_file" || continue
  case $ac_file in
    *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
    *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
	  break;;
    * ) break;;
  esac
done
else
  { { echo "$as_me:$LINENO: error: cannot compute suffix of executables: cannot compile and link
See \`config.log' for more details." >&5
echo "$as_me: error: cannot compute suffix of executables: cannot compile and link
See \`config.log' for more details." >&2;}
   { (exit 1); exit 1; }; }
fi

rm -f conftest$ac_cv_exeext
{ echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
echo "${ECHO_T}$ac_cv_exeext" >&6; }

rm -f conftest.$ac_ext
EXEEXT=$ac_cv_exeext
ac_exeext=$EXEEXT
{ echo "$as_me:$LINENO: checking for suffix of object files" >&5
echo $ECHO_N "checking for suffix of object files... $ECHO_C" >&6; }
if test "${ac_cv_objext+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.o conftest.obj
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; then
  for ac_file in conftest.o conftest.obj conftest.*; do
  test -f "$ac_file" || continue;
  case $ac_file in
    *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf ) ;;
    *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
       break;;
  esac
done
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

{ { echo "$as_me:$LINENO: error: cannot compute suffix of object files: cannot compile
See \`config.log' for more details." >&5
echo "$as_me: error: cannot compute suffix of object files: cannot compile
See \`config.log' for more details." >&2;}
   { (exit 1); exit 1; }; }
fi

rm -f conftest.$ac_cv_objext conftest.$ac_ext
fi
{ echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
echo "${ECHO_T}$ac_cv_objext" >&6; }
OBJEXT=$ac_cv_objext
ac_objext=$OBJEXT
{ echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
echo $ECHO_N "checking whether we are using the GNU C++ compiler... $ECHO_C" >&6; }
if test "${ac_cv_cxx_compiler_gnu+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{
#ifndef __GNUC__
       choke me
#endif

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_compiler_gnu=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_compiler_gnu=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_cv_cxx_compiler_gnu=$ac_compiler_gnu

fi
{ echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6; }
GXX=`test $ac_compiler_gnu = yes && echo yes`
ac_test_CXXFLAGS=${CXXFLAGS+set}
ac_save_CXXFLAGS=$CXXFLAGS
{ echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
echo $ECHO_N "checking whether $CXX accepts -g... $ECHO_C" >&6; }
if test "${ac_cv_prog_cxx_g+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_save_cxx_werror_flag=$ac_cxx_werror_flag
   ac_cxx_werror_flag=yes
   ac_cv_prog_cxx_g=no
   CXXFLAGS="-g"
   cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_prog_cxx_g=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	CXXFLAGS=""
      cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  :
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cxx_werror_flag=$ac_save_cxx_werror_flag
	 CXXFLAGS="-g"
	 cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_prog_cxx_g=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5


fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
   ac_cxx_werror_flag=$ac_save_cxx_werror_flag
fi
{ echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
echo "${ECHO_T}$ac_cv_prog_cxx_g" >&6; }
if test "$ac_test_CXXFLAGS" = set; then
  CXXFLAGS=$ac_save_CXXFLAGS
elif test $ac_cv_prog_cxx_g = yes; then
  if test "$GXX" = yes; then
    CXXFLAGS="-g -O2"
  else
    CXXFLAGS="-g"
  fi
else
  if test "$GXX" = yes; then
    CXXFLAGS="-O2"
  else
    CXXFLAGS=
  fi
fi
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu

ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu
if test -n "$ac_tool_prefix"; then
  # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args.
set dummy ${ac_tool_prefix}gcc; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_CC+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$CC"; then
  ac_cv_prog_CC="$CC" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_CC="${ac_tool_prefix}gcc"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
  { echo "$as_me:$LINENO: result: $CC" >&5
echo "${ECHO_T}$CC" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


fi
if test -z "$ac_cv_prog_CC"; then
  ac_ct_CC=$CC
  # Extract the first word of "gcc", so it can be a program name with args.
set dummy gcc; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$ac_ct_CC"; then
  ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_ac_ct_CC="gcc"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
ac_ct_CC=$ac_cv_prog_ac_ct_CC
if test -n "$ac_ct_CC"; then
  { echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
echo "${ECHO_T}$ac_ct_CC" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi

  if test "x$ac_ct_CC" = x; then
    CC=""
  else
    case $cross_compiling:$ac_tool_warned in
yes:)
{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
whose name does not start with the host triplet.  If you think this
configuration is useful to you, please write to autoconf@gnu.org." >&5
echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
whose name does not start with the host triplet.  If you think this
configuration is useful to you, please write to autoconf@gnu.org." >&2;}
ac_tool_warned=yes ;;
esac
    CC=$ac_ct_CC
  fi
else
  CC="$ac_cv_prog_CC"
fi

if test -z "$CC"; then
          if test -n "$ac_tool_prefix"; then
    # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
set dummy ${ac_tool_prefix}cc; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_CC+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$CC"; then
  ac_cv_prog_CC="$CC" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_CC="${ac_tool_prefix}cc"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
  { echo "$as_me:$LINENO: result: $CC" >&5
echo "${ECHO_T}$CC" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  fi
fi
if test -z "$CC"; then
  # Extract the first word of "cc", so it can be a program name with args.
set dummy cc; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_CC+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$CC"; then
  ac_cv_prog_CC="$CC" # Let the user override the test.
else
  ac_prog_rejected=no
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
       ac_prog_rejected=yes
       continue
     fi
    ac_cv_prog_CC="cc"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

if test $ac_prog_rejected = yes; then
  # We found a bogon in the path, so make sure we never use it.
  set dummy $ac_cv_prog_CC
  shift
  if test $# != 0; then
    # We chose a different compiler from the bogus one.
    # However, it has the same basename, so the bogon will be chosen
    # first if we set CC to just the basename; use the full file name.
    shift
    ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@"
  fi
fi
fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
  { echo "$as_me:$LINENO: result: $CC" >&5
echo "${ECHO_T}$CC" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


fi
if test -z "$CC"; then
  if test -n "$ac_tool_prefix"; then
  for ac_prog in cl.exe
  do
    # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
set dummy $ac_tool_prefix$ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_CC+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$CC"; then
  ac_cv_prog_CC="$CC" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
  { echo "$as_me:$LINENO: result: $CC" >&5
echo "${ECHO_T}$CC" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    test -n "$CC" && break
  done
fi
if test -z "$CC"; then
  ac_ct_CC=$CC
  for ac_prog in cl.exe
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$ac_ct_CC"; then
  ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_ac_ct_CC="$ac_prog"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
ac_ct_CC=$ac_cv_prog_ac_ct_CC
if test -n "$ac_ct_CC"; then
  { echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
echo "${ECHO_T}$ac_ct_CC" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$ac_ct_CC" && break
done

  if test "x$ac_ct_CC" = x; then
    CC=""
  else
    case $cross_compiling:$ac_tool_warned in
yes:)
{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
whose name does not start with the host triplet.  If you think this
configuration is useful to you, please write to autoconf@gnu.org." >&5
echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
whose name does not start with the host triplet.  If you think this
configuration is useful to you, please write to autoconf@gnu.org." >&2;}
ac_tool_warned=yes ;;
esac
    CC=$ac_ct_CC
  fi
fi

fi


test -z "$CC" && { { echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH
See \`config.log' for more details." >&5
echo "$as_me: error: no acceptable C compiler found in \$PATH
See \`config.log' for more details." >&2;}
   { (exit 1); exit 1; }; }

# Provide some information about the compiler.
echo "$as_me:$LINENO: checking for C compiler version" >&5
ac_compiler=`set X $ac_compile; echo $2`
{ (ac_try="$ac_compiler --version >&5"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compiler --version >&5") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }
{ (ac_try="$ac_compiler -v >&5"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compiler -v >&5") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }
{ (ac_try="$ac_compiler -V >&5"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compiler -V >&5") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }

{ echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
echo $ECHO_N "checking whether we are using the GNU C compiler... $ECHO_C" >&6; }
if test "${ac_cv_c_compiler_gnu+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{
#ifndef __GNUC__
       choke me
#endif

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_compiler_gnu=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_compiler_gnu=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_cv_c_compiler_gnu=$ac_compiler_gnu

fi
{ echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6; }
GCC=`test $ac_compiler_gnu = yes && echo yes`
ac_test_CFLAGS=${CFLAGS+set}
ac_save_CFLAGS=$CFLAGS
{ echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
echo $ECHO_N "checking whether $CC accepts -g... $ECHO_C" >&6; }
if test "${ac_cv_prog_cc_g+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_save_c_werror_flag=$ac_c_werror_flag
   ac_c_werror_flag=yes
   ac_cv_prog_cc_g=no
   CFLAGS="-g"
   cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_prog_cc_g=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	CFLAGS=""
      cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  :
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_c_werror_flag=$ac_save_c_werror_flag
	 CFLAGS="-g"
	 cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_prog_cc_g=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5


fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
   ac_c_werror_flag=$ac_save_c_werror_flag
fi
{ echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
echo "${ECHO_T}$ac_cv_prog_cc_g" >&6; }
if test "$ac_test_CFLAGS" = set; then
  CFLAGS=$ac_save_CFLAGS
elif test $ac_cv_prog_cc_g = yes; then
  if test "$GCC" = yes; then
    CFLAGS="-g -O2"
  else
    CFLAGS="-g"
  fi
else
  if test "$GCC" = yes; then
    CFLAGS="-O2"
  else
    CFLAGS=
  fi
fi
{ echo "$as_me:$LINENO: checking for $CC option to accept ISO C89" >&5
echo $ECHO_N "checking for $CC option to accept ISO C89... $ECHO_C" >&6; }
if test "${ac_cv_prog_cc_c89+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_cv_prog_cc_c89=no
ac_save_CC=$CC
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <stdarg.h>
#include <stdio.h>
#include <sys/types.h>
#include <sys/stat.h>
/* Most of the following tests are stolen from RCS 5.7's src/conf.sh.  */
struct buf { int x; };
FILE * (*rcsopen) (struct buf *, struct stat *, int);
static char *e (p, i)
     char **p;
     int i;
{
  return p[i];
}
static char *f (char * (*g) (char **, int), char **p, ...)
{
  char *s;
  va_list v;
  va_start (v,p);
  s = g (p, va_arg (v,int));
  va_end (v);
  return s;
}

/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default.  It has
   function prototypes and stuff, but not '\xHH' hex character constants.
   These don't provoke an error unfortunately, instead are silently treated
   as 'x'.  The following induces an error, until -std is added to get
   proper ANSI mode.  Curiously '\x00'!='x' always comes out true, for an
   array size at least.  It's necessary to write '\x00'==0 to get something
   that's true only with -std.  */
int osf4_cc_array ['\x00' == 0 ? 1 : -1];

/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
   inside strings and character constants.  */
#define FOO(x) 'x'
int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];

int test (int i, double x);
struct s1 {int (*f) (int a);};
struct s2 {int (*f) (double a);};
int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int);
int argc;
char **argv;
int
main ()
{
return f (e, argv, 0) != argv[0]  ||  f (e, argv, 1) != argv[1];
  ;
  return 0;
}
_ACEOF
for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
	-Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
do
  CC="$ac_save_CC $ac_arg"
  rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_prog_cc_c89=$ac_arg
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5


fi

rm -f core conftest.err conftest.$ac_objext
  test "x$ac_cv_prog_cc_c89" != "xno" && break
done
rm -f conftest.$ac_ext
CC=$ac_save_CC

fi
# AC_CACHE_VAL
case "x$ac_cv_prog_cc_c89" in
  x)
    { echo "$as_me:$LINENO: result: none needed" >&5
echo "${ECHO_T}none needed" >&6; } ;;
  xno)
    { echo "$as_me:$LINENO: result: unsupported" >&5
echo "${ECHO_T}unsupported" >&6; } ;;
  *)
    CC="$CC $ac_cv_prog_cc_c89"
    { echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5
echo "${ECHO_T}$ac_cv_prog_cc_c89" >&6; } ;;
esac


ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu

ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu
{ echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
echo $ECHO_N "checking how to run the C preprocessor... $ECHO_C" >&6; }
# On Suns, sometimes $CPP names a directory.
if test -n "$CPP" && test -d "$CPP"; then
  CPP=
fi
if test -z "$CPP"; then
  if test "${ac_cv_prog_CPP+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
      # Double quotes because CPP needs to be expanded
    for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp"
    do
      ac_preproc_ok=false
for ac_c_preproc_warn_flag in '' yes
do
  # Use a header file that comes with gcc, so configuring glibc
  # with a fresh cross-compiler works.
  # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
  # <limits.h> exists even on freestanding compilers.
  # On the NeXT, cc -E runs the code through the compiler's parser,
  # not just through cpp. "Syntax error" is here to catch this case.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif
		     Syntax error
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  :
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  # Broken: fails on valid input.
continue
fi

rm -f conftest.err conftest.$ac_ext

  # OK, works on sane cases.  Now check whether nonexistent headers
  # can be detected and how.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <ac_nonexistent.h>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  # Broken: success on invalid input.
continue
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  # Passes both tests.
ac_preproc_ok=:
break
fi

rm -f conftest.err conftest.$ac_ext

done
# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
rm -f conftest.err conftest.$ac_ext
if $ac_preproc_ok; then
  break
fi

    done
    ac_cv_prog_CPP=$CPP

fi
  CPP=$ac_cv_prog_CPP
else
  ac_cv_prog_CPP=$CPP
fi
{ echo "$as_me:$LINENO: result: $CPP" >&5
echo "${ECHO_T}$CPP" >&6; }
ac_preproc_ok=false
for ac_c_preproc_warn_flag in '' yes
do
  # Use a header file that comes with gcc, so configuring glibc
  # with a fresh cross-compiler works.
  # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
  # <limits.h> exists even on freestanding compilers.
  # On the NeXT, cc -E runs the code through the compiler's parser,
  # not just through cpp. "Syntax error" is here to catch this case.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif
		     Syntax error
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  :
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  # Broken: fails on valid input.
continue
fi

rm -f conftest.err conftest.$ac_ext

  # OK, works on sane cases.  Now check whether nonexistent headers
  # can be detected and how.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <ac_nonexistent.h>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  # Broken: success on invalid input.
continue
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  # Passes both tests.
ac_preproc_ok=:
break
fi

rm -f conftest.err conftest.$ac_ext

done
# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
rm -f conftest.err conftest.$ac_ext
if $ac_preproc_ok; then
  :
else
  { { echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check
See \`config.log' for more details." >&5
echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check
See \`config.log' for more details." >&2;}
   { (exit 1); exit 1; }; }
fi

ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu

if test -n "$ac_tool_prefix"; then
  # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.
set dummy ${ac_tool_prefix}ranlib; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_RANLIB+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$RANLIB"; then
  ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
RANLIB=$ac_cv_prog_RANLIB
if test -n "$RANLIB"; then
  { echo "$as_me:$LINENO: result: $RANLIB" >&5
echo "${ECHO_T}$RANLIB" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


fi
if test -z "$ac_cv_prog_RANLIB"; then
  ac_ct_RANLIB=$RANLIB
  # Extract the first word of "ranlib", so it can be a program name with args.
set dummy ranlib; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if test -n "$ac_ct_RANLIB"; then
  ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_prog_ac_ct_RANLIB="ranlib"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

fi
fi
ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB
if test -n "$ac_ct_RANLIB"; then
  { echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
echo "${ECHO_T}$ac_ct_RANLIB" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi

  if test "x$ac_ct_RANLIB" = x; then
    RANLIB=":"
  else
    case $cross_compiling:$ac_tool_warned in
yes:)
{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
whose name does not start with the host triplet.  If you think this
configuration is useful to you, please write to autoconf@gnu.org." >&5
echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
whose name does not start with the host triplet.  If you think this
configuration is useful to you, please write to autoconf@gnu.org." >&2;}
ac_tool_warned=yes ;;
esac
    RANLIB=$ac_ct_RANLIB
  fi
else
  RANLIB="$ac_cv_prog_RANLIB"
fi

# Find a good install program.  We prefer a C program (faster),
# so one script is as good as another.  But avoid the broken or
# incompatible versions:
# SysV /etc/install, /usr/sbin/install
# SunOS /usr/etc/install
# IRIX /sbin/install
# AIX /bin/install
# AmigaOS /C/install, which installs bootblocks on floppy discs
# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag
# AFS /usr/afsws/bin/install, which mishandles nonexistent args
# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
# OS/2's system install, which has a completely different semantic
# ./install, which can be erroneously created by make from ./install.sh.
{ echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6; }
if test -z "$INSTALL"; then
if test "${ac_cv_path_install+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  # Account for people who put trailing slashes in PATH elements.
case $as_dir/ in
  ./ | .// | /cC/* | \
  /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \
  ?:\\/os2\\/install\\/* | ?:\\/OS2\\/INSTALL\\/* | \
  /usr/ucb/* ) ;;
  *)
    # OSF1 and SCO ODT 3.0 have their own names for install.
    # Don't use installbsd from OSF since it installs stuff as root
    # by default.
    for ac_prog in ginstall scoinst install; do
      for ac_exec_ext in '' $ac_executable_extensions; do
	if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then
	  if test $ac_prog = install &&
	    grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
	    # AIX install.  It has an incompatible calling convention.
	    :
	  elif test $ac_prog = install &&
	    grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
	    # program-specific install script used by HP pwplus--don't use.
	    :
	  else
	    ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
	    break 3
	  fi
	fi
      done
    done
    ;;
esac
done
IFS=$as_save_IFS


fi
  if test "${ac_cv_path_install+set}" = set; then
    INSTALL=$ac_cv_path_install
  else
    # As a last resort, use the slow shell script.  Don't cache a
    # value for INSTALL within a source directory, because that will
    # break other packages using the cache if that directory is
    # removed, or if the value is a relative name.
    INSTALL=$ac_install_sh
  fi
fi
{ echo "$as_me:$LINENO: result: $INSTALL" >&5
echo "${ECHO_T}$INSTALL" >&6; }

# Use test -z because SunOS4 sh mishandles braces in ${var-val}.
# It thinks the first close brace ends the variable substitution.
test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}'

test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}'

test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'

{ echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6; }
set x ${MAKE-make}; ac_make=`echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.make <<\_ACEOF
SHELL = /bin/sh
all:
	@echo '@@@%%%=$(MAKE)=@@@%%%'
_ACEOF
# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
case `${MAKE-make} -f conftest.make 2>/dev/null` in
  *@@@%%%=?*=@@@%%%*)
    eval ac_cv_prog_make_${ac_make}_set=yes;;
  *)
    eval ac_cv_prog_make_${ac_make}_set=no;;
esac
rm -f conftest.make
fi
if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then
  { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
  SET_MAKE=
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
  SET_MAKE="MAKE=${MAKE-make}"
fi


# Extract the first word of "autoconf", so it can be a program name with args.
set dummy autoconf; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_AUTOCONF+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $AUTOCONF in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_AUTOCONF="$AUTOCONF" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_AUTOCONF="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_AUTOCONF" && ac_cv_path_AUTOCONF="autoconf"
  ;;
esac
fi
AUTOCONF=$ac_cv_path_AUTOCONF
if test -n "$AUTOCONF"; then
  { echo "$as_me:$LINENO: result: $AUTOCONF" >&5
echo "${ECHO_T}$AUTOCONF" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


# Extract the first word of "aclocal", so it can be a program name with args.
set dummy aclocal; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_ACLOCAL+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $ACLOCAL in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_ACLOCAL="$ACLOCAL" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_ACLOCAL="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_ACLOCAL" && ac_cv_path_ACLOCAL="aclocal"
  ;;
esac
fi
ACLOCAL=$ac_cv_path_ACLOCAL
if test -n "$ACLOCAL"; then
  { echo "$as_me:$LINENO: result: $ACLOCAL" >&5
echo "${ECHO_T}$ACLOCAL" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


# Extract the first word of "ar", so it can be a program name with args.
set dummy ar; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_AR+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $AR in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_AR="$AR" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_AR="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_AR" && ac_cv_path_AR="ar"
  ;;
esac
fi
AR=$ac_cv_path_AR
if test -n "$AR"; then
  { echo "$as_me:$LINENO: result: $AR" >&5
echo "${ECHO_T}$AR" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi



# The Lisp language binding has been removed for the time being, because it
# no longer works in recent versions of libSBML.



# Check whether --with-swig was given.
if test "${with_swig+set}" = set; then
  withval=$with_swig; with_swig=$withval
else
  with_swig=no
fi


  if test "$with_swig" != "no"; then

    if test $with_swig != yes; then


      with_swig=`echo $with_swig | sed -e 's,\(.*\)/$,\1,g'`

      # Extract the first word of "swig", so it can be a program name with args.
set dummy swig; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_SWIG+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $SWIG in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_SWIG="$SWIG" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_swig/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_SWIG="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_SWIG" && ac_cv_path_SWIG="no"
  ;;
esac
fi
SWIG=$ac_cv_path_SWIG
if test -n "$SWIG"; then
  { echo "$as_me:$LINENO: result: $SWIG" >&5
echo "${ECHO_T}$SWIG" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    else

      # Extract the first word of "swig", so it can be a program name with args.
set dummy swig; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_SWIG+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $SWIG in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_SWIG="$SWIG" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_SWIG="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
SWIG=$ac_cv_path_SWIG
if test -n "$SWIG"; then
  { echo "$as_me:$LINENO: result: $SWIG" >&5
echo "${ECHO_T}$SWIG" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    fi


    if test -z "$SWIG" -o "$SWIG" = "no"; then
      { { echo "$as_me:$LINENO: error: Could not find \`swig' executable." >&5
echo "$as_me: error: Could not find \`swig' executable." >&2;}
   { (exit 1); exit 1; }; }
    fi



      { echo "$as_me:$LINENO: checking $SWIG version >= 1.3.33" >&5
echo $ECHO_N "checking $SWIG version >= 1.3.33... $ECHO_C" >&6; }



      rx=`echo 1.3.33 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\1/'`
      ry=`echo 1.3.33 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\2/'`
      rz=`echo 1.3.33 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\3/'`

      version=`"$SWIG" -version | tr -d '\015'`

      sx=`echo $version | sed -e 's/SWIG Version \([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\1/'`
      sy=`echo $version | sed -e 's/SWIG Version \([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\2/'`
      sz=`echo $version | sed -e 's/SWIG Version \([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\3/'`



      if test $sx -gt $rx \
         || (test $sx -eq $rx && test $sy -gt $ry) \
         || (test $sx -eq $rx && test $sy -eq $ry && test $sz -ge $rz); then
        { echo "$as_me:$LINENO: result: yes (found $sx.$sy.$sz)" >&5
echo "${ECHO_T}yes (found $sx.$sy.$sz)" >&6; }


        SWIGLIB=`"$SWIG" -swiglib`
      else
        { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
        { { echo "$as_me:$LINENO: error: Need SWIG version 1.3.33, but only found version $sx.$sy.$sz." >&5
echo "$as_me: error: Need SWIG version 1.3.33, but only found version $sx.$sy.$sz." >&2;}
   { (exit 1); exit 1; }; }
      fi





cat >>confdefs.h <<\_ACEOF
#define USE_SWIG 1
_ACEOF

    USE_SWIG=1









  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_SWIG"






# Check whether --with-python was given.
if test "${with_python+set}" = set; then
  withval=$with_python; with_python=$withval
else
  with_python=no
fi


  if test $with_python != no; then


    if test $with_python != yes;
    then
            with_python=`echo $with_python | sed -e 's,\(.*\)/$,\1,g'`

      # Extract the first word of "python", so it can be a program name with args.
set dummy python; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_PYTHON+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $PYTHON in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_PYTHON="$PYTHON" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_python/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_PYTHON="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_PYTHON" && ac_cv_path_PYTHON="no"
  ;;
esac
fi
PYTHON=$ac_cv_path_PYTHON
if test -n "$PYTHON"; then
  { echo "$as_me:$LINENO: result: $PYTHON" >&5
echo "${ECHO_T}$PYTHON" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    else
      # Extract the first word of "python", so it can be a program name with args.
set dummy python; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_PYTHON+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $PYTHON in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_PYTHON="$PYTHON" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_PYTHON="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
PYTHON=$ac_cv_path_PYTHON
if test -n "$PYTHON"; then
  { echo "$as_me:$LINENO: result: $PYTHON" >&5
echo "${ECHO_T}$PYTHON" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    fi

    if test -z $PYTHON -o "$PYTHON" = "no" -o ! -f $PYTHON;
    then
      { { echo "$as_me:$LINENO: error: *** python missing - please install first or check config.log ***" >&5
echo "$as_me: error: *** python missing - please install first or check config.log ***" >&2;}
   { (exit 1); exit 1; }; }
    fi



    { echo "$as_me:$LINENO: checking for Python prefix" >&5
echo $ECHO_N "checking for Python prefix... $ECHO_C" >&6; }
    PYTHON_PREFIX=`("$PYTHON" -c "import sys; print sys.prefix") 2>/dev/null`
    { echo "$as_me:$LINENO: result: $PYTHON_PREFIX" >&5
echo "${ECHO_T}$PYTHON_PREFIX" >&6; }


    PYTHON_VERSION=`"$PYTHON" -c "import sys; print sys.version[:3]"`


    PYTHON_NAME="python${PYTHON_VERSION}"

    PYTHON_H="${PYTHON_PREFIX}/include/${PYTHON_NAME}/Python.h"
    { echo "$as_me:$LINENO: checking for Python.h" >&5
echo $ECHO_N "checking for Python.h... $ECHO_C" >&6; }
    if test -z $PYTHON_H || ! test -f $PYTHON_H;
    then
      { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
      { { echo "$as_me:$LINENO: error: *** $PYTHON_H missing - please install first or check config.log ***" >&5
echo "$as_me: error: *** $PYTHON_H missing - please install first or check config.log ***" >&2;}
   { (exit 1); exit 1; }; }
    fi
    { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }


    case $host in
    *darwin*)


	if test `expr "${PYTHON_PREFIX}" ':' '/Library/Frameworks/.*'` -ne 0; then

   	  PYTHON_CPPFLAGS="-I${PYTHON_PREFIX}/include/${PYTHON_NAME}"
	  PYTHON_LDFLAGS="-L${PYTHON_PREFIX}/lib/${PYTHON_NAME}/lib-dynload -F/Library/Frameworks -framework Python"

	elif test `expr "${PYTHON_PREFIX}" ':' '/System/Library/Frameworks/.*'` -ne 0; then

   	  PYTHON_CPPFLAGS="-I${PYTHON_PREFIX}/include/${PYTHON_NAME}"
	  PYTHON_LDFLAGS="-L${PYTHON_PREFIX}/lib/${PYTHON_NAME}/lib-dynload -F/System/Library/Frameworks -framework Python"

	else
	  macosx_version=`sw_vers -productVersion | cut -d"." -f1,2`
          if test ${macosx_version} '>' 10.2; then

   	    PYTHON_CPPFLAGS="-I${PYTHON_PREFIX}/include/${PYTHON_NAME}"
	    PYTHON_LDFLAGS="-L${PYTHON_PREFIX}/lib/${PYTHON_NAME}/lib-dynload -undefined dynamic_lookup"

	  else

   	    PYTHON_CPPFLAGS="-I${PYTHON_PREFIX}/include/${PYTHON_NAME}"
	    PYTHON_LDFLAGS="-L${PYTHON_PREFIX}/lib/${PYTHON_NAME}/lib-dynload -bundle_loader ${PYTHON}"

	  fi
	fi

  RUN_LDPATH="$RUN_LDPATH:${PYTHON_PREFIX}/lib/${PYTHON_NAME}/lib-dynload"


        # MacOS X note: this MUST remain .so even though we use .dylib for libsbml.
        PYTHON_EXT="so"
	;;
    *cygwin* | *mingw*)
	PYTHON_CPPFLAGS="-I${PYTHON_PREFIX}/include/${PYTHON_NAME} -DUSE_DL_IMPORT"
	PYTHON_LDFLAGS="-L${PYTHON_PREFIX}/lib/${PYTHON_NAME}/config"
        PYTHON_LIBS="-l${PYTHON_NAME}"

  RUN_LDPATH="$RUN_LDPATH:${PYTHON_PREFIX}/lib/${PYTHON_NAME}/config"

        PYTHON_EXT="dll"
	;;
    *)
	PYTHON_CPPFLAGS="-I${PYTHON_PREFIX}/include/${PYTHON_NAME}"
        PYTHON_LDFLAGS="-L${PYTHON_PREFIX}/lib/${PYTHON_NAME}/config"
        PYTHON_LIBS="-l${PYTHON_NAME}"

  RUN_LDPATH="$RUN_LDPATH:${PYTHON_PREFIX}/lib/${PYTHON_NAME}/config"

        PYTHON_EXT="so"
	;;
    esac


cat >>confdefs.h <<\_ACEOF
#define USE_PYTHON 1
_ACEOF

    USE_PYTHON=1







  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_PYTHON"






# Check whether --with-perl was given.
if test "${with_perl+set}" = set; then
  withval=$with_perl; with_perl=$withval
else
  with_perl=no
fi


  if test $with_perl != no; then


    if test $with_perl != yes; then
      # Extract the first word of "perl", so it can be a program name with args.
set dummy perl; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_PERL+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $PERL in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_PERL="$PERL" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_perl/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_PERL="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_PERL" && ac_cv_path_PERL="no"
  ;;
esac
fi
PERL=$ac_cv_path_PERL
if test -n "$PERL"; then
  { echo "$as_me:$LINENO: result: $PERL" >&5
echo "${ECHO_T}$PERL" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    else
      # Extract the first word of "perl", so it can be a program name with args.
set dummy perl; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_PERL+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $PERL in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_PERL="$PERL" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_PERL="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
PERL=$ac_cv_path_PERL
if test -n "$PERL"; then
  { echo "$as_me:$LINENO: result: $PERL" >&5
echo "${ECHO_T}$PERL" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    fi

    if test $PERL != "perl" && ! test -f $PERL;
    then
      { { echo "$as_me:$LINENO: error: *** $PERL missing - please install first or check config.log ***" >&5
echo "$as_me: error: *** $PERL missing - please install first or check config.log ***" >&2;}
   { (exit 1); exit 1; }; }
    fi

    CHECK_MK=`($PERL -mExtUtils::MakeMaker -e '{print "OK"}') 2>/dev/null`
    if test x$CHECK_MK != xOK;
    then
      { { echo "$as_me:$LINENO: error: *** ExtUtils::MakeMaker module is missing - please install first or check config.log ***" >&5
echo "$as_me: error: *** ExtUtils::MakeMaker module is missing - please install first or check config.log ***" >&2;}
   { (exit 1); exit 1; }; }
    fi


cat >>confdefs.h <<\_ACEOF
#define USE_PERL 1
_ACEOF

    USE_PERL=1






  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_PERL"




# Check whether --with-java was given.
if test "${with_java+set}" = set; then
  withval=$with_java; with_java=$withval
else
  with_java=no
fi


  if test "$with_java" != "no"; then

    if test "$with_java" != "yes"; then


      with_java=`echo $with_java | sed -e 's,\(.*\)/$,\1,g'`

      # Extract the first word of "java", so it can be a program name with args.
set dummy java; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_JAVA+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $JAVA in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_JAVA="$JAVA" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_java/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_JAVA="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_JAVA" && ac_cv_path_JAVA="no"
  ;;
esac
fi
JAVA=$ac_cv_path_JAVA
if test -n "$JAVA"; then
  { echo "$as_me:$LINENO: result: $JAVA" >&5
echo "${ECHO_T}$JAVA" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "javac", so it can be a program name with args.
set dummy javac; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_JAVAC+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $JAVAC in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_JAVAC="$JAVAC" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_java/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_JAVAC="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_JAVAC" && ac_cv_path_JAVAC="no"
  ;;
esac
fi
JAVAC=$ac_cv_path_JAVAC
if test -n "$JAVAC"; then
  { echo "$as_me:$LINENO: result: $JAVAC" >&5
echo "${ECHO_T}$JAVAC" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "jar", so it can be a program name with args.
set dummy jar; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_JAR+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $JAR in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_JAR="$JAR" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_java/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_JAR="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_JAR" && ac_cv_path_JAR="no"
  ;;
esac
fi
JAR=$ac_cv_path_JAR
if test -n "$JAR"; then
  { echo "$as_me:$LINENO: result: $JAR" >&5
echo "${ECHO_T}$JAR" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    else

      # Extract the first word of "java", so it can be a program name with args.
set dummy java; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_JAVA+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $JAVA in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_JAVA="$JAVA" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_JAVA="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
JAVA=$ac_cv_path_JAVA
if test -n "$JAVA"; then
  { echo "$as_me:$LINENO: result: $JAVA" >&5
echo "${ECHO_T}$JAVA" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "javac", so it can be a program name with args.
set dummy javac; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_JAVAC+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $JAVAC in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_JAVAC="$JAVAC" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_JAVAC="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
JAVAC=$ac_cv_path_JAVAC
if test -n "$JAVAC"; then
  { echo "$as_me:$LINENO: result: $JAVAC" >&5
echo "${ECHO_T}$JAVAC" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "jar", so it can be a program name with args.
set dummy jar; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_JAR+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $JAR in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_JAR="$JAR" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_JAR="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
JAR=$ac_cv_path_JAR
if test -n "$JAR"; then
  { echo "$as_me:$LINENO: result: $JAR" >&5
echo "${ECHO_T}$JAR" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    fi


    if test -z "$JAVA" -o "$JAVA" = "no"; then
      { { echo "$as_me:$LINENO: error: Could not find \`java' executable." >&5
echo "$as_me: error: Could not find \`java' executable." >&2;}
   { (exit 1); exit 1; }; }
    fi
    if test -z "$JAVAC" -o "$JAVAC" = "no"; then
      { { echo "$as_me:$LINENO: error: Could not find \`javac' executable." >&5
echo "$as_me: error: Could not find \`javac' executable." >&2;}
   { (exit 1); exit 1; }; }
    fi



      { echo "$as_me:$LINENO: checking $JAVA version >= 1.5.0" >&5
echo $ECHO_N "checking $JAVA version >= 1.5.0... $ECHO_C" >&6; }



      rx=`echo 1.5.0 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\1/'`
      ry=`echo 1.5.0 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\2/'`
      rz=`echo 1.5.0 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\3/'`

      version=`"$JAVA" -version 2>&1 | sed -e 's/\(.*\)$/\1/;q'`

      jx=`echo $version | sed -e 's/java version \"\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\1/'`
      jy=`echo $version | sed -e 's/java version \"\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\2/'`
      jz=`echo $version | sed -e 's/java version \"\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\3/'`



      if test $jx -gt $rx \
         || (test $jx -eq $rx -a $jy -gt $ry) \
         || (test $jx -eq $rx -a $jy -eq $ry -a $jz -ge $rz); then
        { echo "$as_me:$LINENO: result: yes (found $jx.$jy.$jz)" >&5
echo "${ECHO_T}yes (found $jx.$jy.$jz)" >&6; }
      else
        { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
        { { echo "$as_me:$LINENO: error: Need Java version 1.5.0, but only found version $jx.$jy.$jz." >&5
echo "$as_me: error: Need Java version 1.5.0, but only found version $jx.$jy.$jz." >&2;}
   { (exit 1); exit 1; }; }
      fi


      JAVA_VER_MINOR=$jy
      JAVA_VER_SUBMINOR=$jz






    if test "$with_java" = "yes"; then
      while test -h "$JAVAC"; do

                case "$JAVAC" in
          /usr/lib/jvm/*)
            break
            ;;
          *)
            javaclink=`readlink "$JAVAC"`
            ;;
        esac

        case "$javaclink" in
          /*)
            JAVAC="$javaclink"
            ;;
          *)
                        JAVAC=`echo "X${JAVAC}" | sed -e 's/^X//' -e 's:[^/]*$::'`"$javaclink"
            ;;
        esac
      done
    fi


    case "$host" in
      *darwin*)
        framework="/System/Library/Frameworks/JavaVM.framework"
        case $JAVA_VER_MINOR in
          6)
            if test -e "$framework/Versions/CurrentJDK/Headers"; then
              headers="$framework/Versions/CurrentJDK/Headers"
            elif test -e "$framework/Versions/1.6.0/Headers"; then
              headers="$framework/Versions/1.6.0/Headers"
            elif test -e "$framework/Versions/1.6/Headers"; then
              headers="$framework/Versions/1.6/Headers"
            fi
            ;;
          5)
            if test -e "$framework/Versions/CurrentJDK/Headers"; then
              headers="$framework/Versions/CurrentJDK/Headers"
            elif test -e "$framework/Versions/1.5.0/Headers"; then
              headers="$framework/Versions/1.5.0/Headers"
            elif test -e "$framework/Versions/1.5/Headers"; then
              headers="$framework/Versions/1.5/Headers"
            fi
            ;;
          4)
                                                                                                if test $JAVA_VER_SUBMINOR -eq 2; then
              if test -e "$framework/Versions/1.4.2/Headers"; then
                headers="$framework/Versions/1.4.2/Headers"
                elif test -e "$framework/Versions/1.4.1/Headers"; then
                headers="$framework/Versions/1.4.1/Headers"
              fi;
            elif test $JAVA_VER_SUBMINOR -eq 1; then
              if test -e "$framework/Versions/1.4.1/Headers"; then
                headers="$framework/Versions/1.4.1/Headers"
              fi;
            fi
            ;;
        esac

        if test -e "$headers/jni.h"; then
          JAVA_CPPFLAGS="$JAVA_CPPFLAGS -I\"$headers\""
          parent=`dirname "$headers"`
          JAVADOC_JAR="$parent/Classes/classes.jar"
        else
          { { echo "$as_me:$LINENO: error: Cannot find Java include files." >&5
echo "$as_me: error: Cannot find Java include files." >&2;}
   { (exit 1); exit 1; }; }
        fi
      ;;

      *)
        parent=`dirname "$JAVAC"`

        if test -e "$parent/include/jni.h"; then
          headers="${parent}/include"
          JAVA_CPPFLAGS="$JAVA_CPPFLAGS -I\"${headers}\""
        else


          parent=`dirname "${parent}"`

          if test -e "${parent}/include/jni.h"; then
            headers="${parent}/include"
            JAVA_CPPFLAGS="$JAVA_CPPFLAGS -I\"${headers}\""
          else
            { { echo "$as_me:$LINENO: error: Cannot find Java include files." >&5
echo "$as_me: error: Cannot find Java include files." >&2;}
   { (exit 1); exit 1; }; }
          fi
        fi


        case "$host_os" in
          *cygwin*) JAVA_CPPFLAGS="$JAVA_CPPFLAGS -I\"$parent/include/win32\"";;
          freebsd*) JAVA_CPPFLAGS="$JAVA_CPPFLAGS -I\"$parent/include/freebsd\"";;
          linux*)   JAVA_CPPFLAGS="$JAVA_CPPFLAGS -I\"$parent/include/linux\"";;
          solaris*) JAVA_CPPFLAGS="$JAVA_CPPFLAGS -I\"$parent/include/solaris\"";;
        esac

        JAVADOC_JAR="$parent/lib/tools.jar"
      ;;
    esac


    case $host in
    *darwin*)
	JAVA_LDFLAGS="${JAVA_LDFLAGS} -bundle_loader \"${JAVA}\""
	;;
    *)
	JAVA_LDFLAGS=
	;;
    esac


    case $host in
    *darwin*)
	JNIEXT="jnilib"
	JNIBASENAME="libsbmlj"
	;;
    *cygwin*)
	JNIEXT="dll"
	JNIBASENAME="sbmlj"
	;;
    *)
	JNIEXT="so"
	JNIBASENAME="libsbmlj"
	;;
    esac

    if test -z "$headers"; then
      { { echo "$as_me:$LINENO: error: Cannot find Java include files." >&5
echo "$as_me: error: Cannot find Java include files." >&2;}
   { (exit 1); exit 1; }; }
    fi


cat >>confdefs.h <<\_ACEOF
#define USE_JAVA 1
_ACEOF

    USE_JAVA=1








  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_JAVA"




# Check whether --with-matlab was given.
if test "${with_matlab+set}" = set; then
  withval=$with_matlab; with_matlab=$withval
else
  with_matlab=no
fi


  if test $with_matlab != no; then

    if test $with_matlab != yes;
    then
            with_matlab=`echo $with_matlab | sed -e 's,\(.*\)/$,\1,g'`

      # Extract the first word of "mex", so it can be a program name with args.
set dummy mex; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_MEX+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $MEX in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_MEX="$MEX" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_matlab/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_MEX="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_MEX" && ac_cv_path_MEX="no"
  ;;
esac
fi
MEX=$ac_cv_path_MEX
if test -n "$MEX"; then
  { echo "$as_me:$LINENO: result: $MEX" >&5
echo "${ECHO_T}$MEX" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "matlab", so it can be a program name with args.
set dummy matlab; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_MATLAB+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $MATLAB in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_MATLAB="$MATLAB" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_matlab/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_MATLAB="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_MATLAB" && ac_cv_path_MATLAB="no"
  ;;
esac
fi
MATLAB=$ac_cv_path_MATLAB
if test -n "$MATLAB"; then
  { echo "$as_me:$LINENO: result: $MATLAB" >&5
echo "${ECHO_T}$MATLAB" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    else
      # Extract the first word of "mex", so it can be a program name with args.
set dummy mex; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_MEX+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $MEX in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_MEX="$MEX" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_MEX="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
MEX=$ac_cv_path_MEX
if test -n "$MEX"; then
  { echo "$as_me:$LINENO: result: $MEX" >&5
echo "${ECHO_T}$MEX" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "matlab", so it can be a program name with args.
set dummy matlab; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_MATLAB+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $MATLAB in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_MATLAB="$MATLAB" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_MATLAB="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
MATLAB=$ac_cv_path_MATLAB
if test -n "$MATLAB"; then
  { echo "$as_me:$LINENO: result: $MATLAB" >&5
echo "${ECHO_T}$MATLAB" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    fi

    if test -z "$MATLAB" -o "$MATLAB" = "no"; then
      { { echo "$as_me:$LINENO: error: Could not find 'matlab' executable for MATLAB." >&5
echo "$as_me: error: Could not find 'matlab' executable for MATLAB." >&2;}
   { (exit 1); exit 1; }; }
    elif  test -z "$MEX" -o "$MEX" = "no"; then
      { { echo "$as_me:$LINENO: error: Could not find 'mex' executable for MATLAB." >&5
echo "$as_me: error: Could not find 'mex' executable for MATLAB." >&2;}
   { (exit 1); exit 1; }; }
    fi


    case $host in
    *86-*-darwin*)
      MEXEXT="mexmaci"
      ;;

    *powerpc-*-darwin*)
      MEXEXT="mexmac"
      ;;

    *cygwin*)
      MEXEXT="dll"
      ;;

    *x86_64*)
      MEXEXT="mexa64"
      ;;

        *)
      MEXEXT="mexglx"
      ;;

    esac


cat >>confdefs.h <<\_ACEOF
#define USE_MATLAB 1
_ACEOF

    USE_MATLAB=1








  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_MATLAB"




# Check whether --with-octave was given.
if test "${with_octave+set}" = set; then
  withval=$with_octave; with_octave=$withval
else
  with_octave=no
fi


  if test $with_octave != no; then

    if test $with_octave != yes; then
            with_octave=`echo $with_octave | sed -e 's,\(.*\)/$,\1,g'`

      # Extract the first word of "octave", so it can be a program name with args.
set dummy octave; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_OCTAVE+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $OCTAVE in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_OCTAVE="$OCTAVE" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_octave/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_OCTAVE="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_OCTAVE" && ac_cv_path_OCTAVE="no"
  ;;
esac
fi
OCTAVE=$ac_cv_path_OCTAVE
if test -n "$OCTAVE"; then
  { echo "$as_me:$LINENO: result: $OCTAVE" >&5
echo "${ECHO_T}$OCTAVE" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "mkoctfile", so it can be a program name with args.
set dummy mkoctfile; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_MKOCTFILE+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $MKOCTFILE in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_MKOCTFILE="$MKOCTFILE" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_octave/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_MKOCTFILE="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_MKOCTFILE" && ac_cv_path_MKOCTFILE="no"
  ;;
esac
fi
MKOCTFILE=$ac_cv_path_MKOCTFILE
if test -n "$MKOCTFILE"; then
  { echo "$as_me:$LINENO: result: $MKOCTFILE" >&5
echo "${ECHO_T}$MKOCTFILE" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "octave-config", so it can be a program name with args.
set dummy octave-config; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_OCTAVE_CONFIG+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $OCTAVE_CONFIG in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_OCTAVE_CONFIG="$OCTAVE_CONFIG" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_octave/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_OCTAVE_CONFIG="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_OCTAVE_CONFIG" && ac_cv_path_OCTAVE_CONFIG="no"
  ;;
esac
fi
OCTAVE_CONFIG=$ac_cv_path_OCTAVE_CONFIG
if test -n "$OCTAVE_CONFIG"; then
  { echo "$as_me:$LINENO: result: $OCTAVE_CONFIG" >&5
echo "${ECHO_T}$OCTAVE_CONFIG" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    else
      # Extract the first word of "octave", so it can be a program name with args.
set dummy octave; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_OCTAVE+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $OCTAVE in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_OCTAVE="$OCTAVE" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_OCTAVE="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
OCTAVE=$ac_cv_path_OCTAVE
if test -n "$OCTAVE"; then
  { echo "$as_me:$LINENO: result: $OCTAVE" >&5
echo "${ECHO_T}$OCTAVE" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "mkoctfile", so it can be a program name with args.
set dummy mkoctfile; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_MKOCTFILE+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $MKOCTFILE in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_MKOCTFILE="$MKOCTFILE" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_MKOCTFILE="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
MKOCTFILE=$ac_cv_path_MKOCTFILE
if test -n "$MKOCTFILE"; then
  { echo "$as_me:$LINENO: result: $MKOCTFILE" >&5
echo "${ECHO_T}$MKOCTFILE" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      # Extract the first word of "octave-config", so it can be a program name with args.
set dummy octave-config; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_OCTAVE_CONFIG+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $OCTAVE_CONFIG in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_OCTAVE_CONFIG="$OCTAVE_CONFIG" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_OCTAVE_CONFIG="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
OCTAVE_CONFIG=$ac_cv_path_OCTAVE_CONFIG
if test -n "$OCTAVE_CONFIG"; then
  { echo "$as_me:$LINENO: result: $OCTAVE_CONFIG" >&5
echo "${ECHO_T}$OCTAVE_CONFIG" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    fi

    if test -z "$OCTAVE" -o "$OCTAVE" = "no"; then
      { { echo "$as_me:$LINENO: error: Could not find 'octave' executable for Octave." >&5
echo "$as_me: error: Could not find 'octave' executable for Octave." >&2;}
   { (exit 1); exit 1; }; }
    elif  test -z "$MKOCTFILE" -o "$MKOCTFILE" = "no"; then
      { { echo "$as_me:$LINENO: error: Could not find 'mkoctfile' executable for Octave." >&5
echo "$as_me: error: Could not find 'mkoctfile' executable for Octave." >&2;}
   { (exit 1); exit 1; }; }
    fi


    OCTAVE_REQUEST_VERSION=2.9.7
    MKOCTFILE_REQUEST_VERSION=2.9.7

    { echo "$as_me:$LINENO: checking octave version" >&5
echo $ECHO_N "checking octave version... $ECHO_C" >&6; }


    octave_version=`"$OCTAVE" --version 2>&1 | head -n 1 | sed 's/.* \([0-9]*\.[0-9]*\.[0-9]*\).*/\1/p; d'`
    octave_major_ver=`expr $octave_version : '\([0-9]*\)\.[0-9]*\.[0-9]*'`
    octave_minor_ver=`expr $octave_version : '[0-9]*\.\([0-9]*\)\.[0-9]*'`
    octave_micro_ver=`expr $octave_version : '[0-9]*\.[0-9]*\.\([0-9]*\)' '|' 0`


    { echo "$as_me:$LINENO: result: $octave_version" >&5
echo "${ECHO_T}$octave_version" >&6; }

    OCTAVEVERNUM=`printf "%02d%02d%02d" $octave_major_ver $octave_minor_ver $octave_micro_ver`

    if test -n "$OCTAVE_REQUEST_VERSION"; then
      { echo "$as_me:$LINENO: checking if octave version >= (found $OCTAVE_REQUEST_VERSION)" >&5
echo $ECHO_N "checking if octave version >= (found $OCTAVE_REQUEST_VERSION)... $ECHO_C" >&6; }


      octave_major_req=`expr $OCTAVE_REQUEST_VERSION : '\([0-9]*\)\.[0-9]*\.[0-9]*'`
      octave_minor_req=`expr $OCTAVE_REQUEST_VERSION : '[0-9]*\.\([0-9]*\)\.[0-9]*'`
      octave_micro_req=`expr $OCTAVE_REQUEST_VERSION : '[0-9]*\.[0-9]*\.\([0-9]*\)'`


      if test $octave_major_ver -gt $octave_major_req \
         || (test $octave_major_ver -eq $octave_major_req && \
             test $octave_minor_ver -gt $octave_minor_req) \
         || (test $octave_major_ver -eq $octave_major_req && \
             test $octave_minor_ver -eq $octave_minor_req && \
             test $octave_micro_ver -ge $octave_micro_req)
      then
        { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
      else
        { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
        { { echo "$as_me:$LINENO: error: installed version of octave is too old!" >&5
echo "$as_me: error: installed version of octave is too old!" >&2;}
   { (exit 1); exit 1; }; }
      fi
    fi

    { echo "$as_me:$LINENO: checking mkoctfile version" >&5
echo $ECHO_N "checking mkoctfile version... $ECHO_C" >&6; }


    mkoctfile_version=`"$MKOCTFILE" --version 2>&1 | head -n 1 | sed 's/.* \([0-9]*\.[0-9]*\.[0-9]*\).*/\1/p; d'`
    mkoctfile_major_ver=`expr $mkoctfile_version : '\([0-9]*\)\.[0-9]*\.[0-9]*'`
    mkoctfile_minor_ver=`expr $mkoctfile_version : '[0-9]*\.\([0-9]*\)\.[0-9]*'`
    mkoctfile_micro_ver=`expr $mkoctfile_version : '[0-9]*\.[0-9]*\.\([0-9]*\)' '|' 0`


    { echo "$as_me:$LINENO: result: $mkoctfile_version" >&5
echo "${ECHO_T}$mkoctfile_version" >&6; }

    MKOCTFILEVERNUM=`printf "%02d%02d%02d" $mkoctfile_major_ver $mkoctfile_minor_ver $mkoctfile_micro_ver`

    if test -n "$MKOCTFILE_REQUEST_VERSION"; then
      { echo "$as_me:$LINENO: checking if mkoctfile version >= (found $MKOCTFILE_REQUEST_VERSION)" >&5
echo $ECHO_N "checking if mkoctfile version >= (found $MKOCTFILE_REQUEST_VERSION)... $ECHO_C" >&6; }


      mkoctfile_major_req=`expr $MKOCTFILE_REQUEST_VERSION : '\([0-9]*\)\.[0-9]*\.[0-9]*'`
      mkoctfile_minor_req=`expr $MKOCTFILE_REQUEST_VERSION : '[0-9]*\.\([0-9]*\)\.[0-9]*'`
      mkoctfile_micro_req=`expr $MKOCTFILE_REQUEST_VERSION : '[0-9]*\.[0-9]*\.\([0-9]*\)'`


      if test $mkoctfile_major_ver -gt $mkoctfile_major_req \
         || (test $mkoctfile_major_ver -eq $mkoctfile_major_req && \
             test $mkoctfile_minor_ver -gt $mkoctfile_minor_req) \
         || (test $mkoctfile_major_ver -eq $mkoctfile_major_req && \
             test $mkoctfile_minor_ver -eq $mkoctfile_minor_req && \
             test $mkoctfile_micro_ver -ge $mkoctfile_micro_req)
      then
        { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
      else
        { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
        { { echo "$as_me:$LINENO: error: installed version of mkoctfile is too old!" >&5
echo "$as_me: error: installed version of mkoctfile is too old!" >&2;}
   { (exit 1); exit 1; }; }
      fi
    fi

    MKOCTFILE_FLAGS="--mex"
    OCTAVEEXT="mex"

            LOCALOCTFILEDIR=`"$OCTAVE_CONFIG" -p LOCALOCTFILEDIR | sed -e "s#^\`\"$OCTAVE_CONFIG\" -p PREFIX\`##"`


cat >>confdefs.h <<\_ACEOF
#define USE_OCTAVE 1
_ACEOF

    USE_OCTAVE=1








  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_OCTAVE"






# Check whether --with-ruby was given.
if test "${with_ruby+set}" = set; then
  withval=$with_ruby; with_ruby=$withval
else
  with_ruby=no
fi


  if test "x$with_ruby" != xno; then


    if test "x$with_ruby" != xyes;
    then
            with_ruby=`echo $with_ruby | sed -e 's,\(.*\)/$,\1,g'`

      # Extract the first word of "ruby", so it can be a program name with args.
set dummy ruby; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_RUBY+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $RUBY in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_RUBY="$RUBY" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_ruby/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_RUBY="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_RUBY" && ac_cv_path_RUBY="no"
  ;;
esac
fi
RUBY=$ac_cv_path_RUBY
if test -n "$RUBY"; then
  { echo "$as_me:$LINENO: result: $RUBY" >&5
echo "${ECHO_T}$RUBY" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    else
      # Extract the first word of "ruby", so it can be a program name with args.
set dummy ruby; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_RUBY+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $RUBY in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_RUBY="$RUBY" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_RUBY="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
RUBY=$ac_cv_path_RUBY
if test -n "$RUBY"; then
  { echo "$as_me:$LINENO: result: $RUBY" >&5
echo "${ECHO_T}$RUBY" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    fi

    if test -z "$RUBY" -o "$RUBY" = "no" -o ! -f "$RUBY";
    then
      { { echo "$as_me:$LINENO: error: *** ruby missing - please install first or check config.log ***" >&5
echo "$as_me: error: *** ruby missing - please install first or check config.log ***" >&2;}
   { (exit 1); exit 1; }; }
    fi



    { echo "$as_me:$LINENO: checking for ruby prefix" >&5
echo $ECHO_N "checking for ruby prefix... $ECHO_C" >&6; }
    RUBY_PREFIX=`$RUBY -rrbconfig -e "include Config; puts CONFIG['prefix']"`
    { echo "$as_me:$LINENO: result: $RUBY_PREFIX" >&5
echo "${ECHO_T}$RUBY_PREFIX" >&6; }

    if test `$RUBY -rrbconfig -e "puts RUBY_VERSION >= \"1.9.0\" ? \"OK\" : \"OLD\""` = "OK";
    then
      RUBY_ARCHDIR=`$RUBY -rrbconfig -e "include Config; print \"#{CONFIG['rubyhdrdir']} -I#{CONFIG['rubyhdrdir']}/#{CONFIG['arch']}\" "`
      RUBY_H=`$RUBY -rrbconfig -e "include Config; print \"#{CONFIG['rubyhdrdir']}\" "`"/ruby.h"
    else
      RUBY_ARCHDIR=`$RUBY -rrbconfig -e "include Config; puts CONFIG['archdir']"`
      RUBY_H="${RUBY_ARCHDIR}/ruby.h"
    fi

    { echo "$as_me:$LINENO: checking for ruby.h" >&5
echo $ECHO_N "checking for ruby.h... $ECHO_C" >&6; }
    if test -z "$RUBY_H" || ! test -f "$RUBY_H";
    then
      { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }

      { { echo "$as_me:$LINENO: error: *** $RUBY_H missing - please install first or check config.log ***" >&5
echo "$as_me: error: *** $RUBY_H missing - please install first or check config.log ***" >&2;}
   { (exit 1); exit 1; }; }
    fi
    { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }


    RUBY_LIBDIR=`$RUBY -rrbconfig -e "include Config; puts CONFIG['libdir']"`
    RUBY_NAME=`$RUBY -rrbconfig -e "include Config; puts CONFIG['RUBY_SO_NAME']"`


    case $host in
    *darwin*)
   	RUBY_CPPFLAGS="-I${RUBY_ARCHDIR}"
	RUBY_LDFLAGS="-L${RUBY_LIBDIR} -undefined dynamic_lookup"
	;;
    *cygwin* | *mingw*)
	RUBY_CPPFLAGS="-I${RUBY_ARCHDIR} -DUSE_DL_IMPORT"
	RUBY_LDFLAGS="-L${RUBY_LIBDIR}"
        RUBY_LIBS="-l${RUBY_NAME}"

  RUN_LDPATH="$RUN_LDPATH:${RUBY_PREFIX}/lib/${RUBY_NAME}/config"

	;;
    *)
	RUBY_CPPFLAGS="-I${RUBY_ARCHDIR}"
        RUBY_LDFLAGS="-L${RUBY_LIBDIR}"
        RUBY_LIBS="-l${RUBY_NAME}"
	;;
    esac


cat >>confdefs.h <<\_ACEOF
#define USE_RUBY 1
_ACEOF

    USE_RUBY=1






  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_RUBY"




# Check whether --with-csharp was given.
if test "${with_csharp+set}" = set; then
  withval=$with_csharp; with_csharp="$withval"
else
  with_csharp=no
fi



# Check whether --with-cil-interpreter was given.
if test "${with_cil_interpreter+set}" = set; then
  withval=$with_cil_interpreter; CSHARP_BIN="$withval"
else
  CSHARP_BIN=
fi



# Check whether --with-csharp-compiler was given.
if test "${with_csharp_compiler+set}" = set; then
  withval=$with_csharp_compiler; CSHARP_COMPILERBIN="$withval"
else
  CSHARP_COMPILERBIN=
fi


  # First, check for "--with-csharp"
  if test "x${with_csharp}" != xno ; then

    CSHARP_PATH=""
    if test "x${with_csharp}" != xyes;  then
      CSHARP_PATH="$with_csharp:$with_csharp/bin"
    fi

    if test -z "$CSHARP_COMPILERBIN" ; then
      case $host in
      *-*-cygwin* | *-*-mingw*)
        # prefer Mono gmcs (.NET 2.0) over mcs (.NET 1.1) - note mcs-1.2.3 has major pinvoke bug
        if test -z "$CSHARP_PATH"; then
          for ac_prog in csc gmcs mcs cscc
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_COMPILER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_COMPILER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_COMPILER="$CSHARP_COMPILER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_COMPILER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_COMPILER=$ac_cv_path_CSHARP_COMPILER
if test -n "$CSHARP_COMPILER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_COMPILER" >&5
echo "${ECHO_T}$CSHARP_COMPILER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_COMPILER" && break
done

        else
          for ac_prog in csc gmcs mcs cscc
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_COMPILER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_COMPILER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_COMPILER="$CSHARP_COMPILER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $CSHARP_PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_COMPILER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_COMPILER=$ac_cv_path_CSHARP_COMPILER
if test -n "$CSHARP_COMPILER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_COMPILER" >&5
echo "${ECHO_T}$CSHARP_COMPILER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_COMPILER" && break
done
test -n "$CSHARP_COMPILER" || CSHARP_COMPILER=""""

        fi
        if test -n "$CSHARP_COMPILER" && test "$CSHARP_COMPILER" = "csc" ; then
          { echo "$as_me:$LINENO: checking whether csc is the Microsoft CSharp compiler" >&5
echo $ECHO_N "checking whether csc is the Microsoft CSharp compiler... $ECHO_C" >&6; }
          csc 2>/dev/null | grep "C#" > /dev/null || CSHARP_COMPILER=""
          if test -z "$CSHARP_COMPILER" ; then
            { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
            if test -z "$CSHARP_PATH"; then
              for ac_prog in gmcs mcs cscc
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_COMPILER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_COMPILER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_COMPILER="$CSHARP_COMPILER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_COMPILER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_COMPILER=$ac_cv_path_CSHARP_COMPILER
if test -n "$CSHARP_COMPILER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_COMPILER" >&5
echo "${ECHO_T}$CSHARP_COMPILER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_COMPILER" && break
done

            else
              for ac_prog in gmcs mcs cscc
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_COMPILER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_COMPILER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_COMPILER="$CSHARP_COMPILER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $CSHARP_PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_COMPILER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_COMPILER=$ac_cv_path_CSHARP_COMPILER
if test -n "$CSHARP_COMPILER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_COMPILER" >&5
echo "${ECHO_T}$CSHARP_COMPILER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_COMPILER" && break
done
test -n "$CSHARP_COMPILER" || CSHARP_COMPILER=""""

            fi
          else
            { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
          fi
        fi
        ;;
      *)
        if test -z "$CSHARP_PATH"; then
          for ac_prog in gmcs mcs cscc
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_COMPILER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_COMPILER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_COMPILER="$CSHARP_COMPILER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_COMPILER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_COMPILER=$ac_cv_path_CSHARP_COMPILER
if test -n "$CSHARP_COMPILER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_COMPILER" >&5
echo "${ECHO_T}$CSHARP_COMPILER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_COMPILER" && break
done

        else
          for ac_prog in gmcs mcs cscc
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_COMPILER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_COMPILER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_COMPILER="$CSHARP_COMPILER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $CSHARP_PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_COMPILER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_COMPILER=$ac_cv_path_CSHARP_COMPILER
if test -n "$CSHARP_COMPILER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_COMPILER" >&5
echo "${ECHO_T}$CSHARP_COMPILER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_COMPILER" && break
done
test -n "$CSHARP_COMPILER" || CSHARP_COMPILER=""""

        fi
        ;;
      esac
    else
      CSHARP_COMPILER="$CSHARP_COMPILERBIN"
    fi

    # check CSHARP_COMPILER
    { echo "$as_me:$LINENO: checking whether $CSHARP_COMPILER exists" >&5
echo $ECHO_N "checking whether $CSHARP_COMPILER exists... $ECHO_C" >&6; }
    if test -f "$CSHARP_COMPILER" ; then
      { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
    else
      { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
      { { echo "$as_me:$LINENO: error: CSharp Compiler $CSHARP_COMPILER does not exist." >&5
echo "$as_me: error: CSharp Compiler $CSHARP_COMPILER does not exist." >&2;}
   { (exit 1); exit 1; }; }
    fi

    CSHARP_COMPILER_NAME=`echo $CSHARP_COMPILER | sed 's,.*[\/\\],,' `

    CSHARP_PATHSEPARATOR="/"
    CSHARPCYGPATH_W=echo
    if test -z "$CSHARP_BIN" ; then
      CSHARP_CILINTERPRETER=""
      if test "cscc" = "$CSHARP_COMPILER_NAME" ; then
        if test -z "$CSHARP_PATH"; then
          for ac_prog in ilrun
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_CILINTERPRETER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_CILINTERPRETER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_CILINTERPRETER="$CSHARP_CILINTERPRETER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_CILINTERPRETER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_CILINTERPRETER=$ac_cv_path_CSHARP_CILINTERPRETER
if test -n "$CSHARP_CILINTERPRETER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_CILINTERPRETER" >&5
echo "${ECHO_T}$CSHARP_CILINTERPRETER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_CILINTERPRETER" && break
done

        else
          for ac_prog in ilrun
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_CILINTERPRETER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_CILINTERPRETER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_CILINTERPRETER="$CSHARP_CILINTERPRETER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $CSHARP_PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_CILINTERPRETER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_CILINTERPRETER=$ac_cv_path_CSHARP_CILINTERPRETER
if test -n "$CSHARP_CILINTERPRETER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_CILINTERPRETER" >&5
echo "${ECHO_T}$CSHARP_CILINTERPRETER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_CILINTERPRETER" && break
done
test -n "$CSHARP_CILINTERPRETER" || CSHARP_CILINTERPRETER=""""

        fi
      else
        if test "mcs" = "$CSHARP_COMPILER_NAME"; then
          # Check that mcs is the C# compiler and not the Unix mcs utility by examining the output of 'mcs --version'
          # The Mono compiler should emit: Mono C# compiler version a.b.c.d
          csharp_version_raw=`($CSHARP_COMPILER --version) 2>/dev/null`
          csharp_version_searched=`($CSHARP_COMPILER --version | sed -e "/C#/b" -e "/Mono/b" -e d) 2>/dev/null` # return string if contains 'Mono' or 'C#'
          CSHARP_COMPILER_NAME="";
          if test -n "$csharp_version_raw" ; then
            if test "$csharp_version_raw" = "$csharp_version_searched" ; then
              CSHARP_COMPILER_NAME="mcs"
            fi
          fi
          if test "mcs" != "$CSHARP_COMPILER_NAME" ; then
            echo "mcs is not a working Mono C# compiler"
          fi
        fi
        if test "mcs" = "$CSHARP_COMPILER_NAME" || test "gmcs" = "$CSHARP_COMPILER_NAME"; then
            if test -z "$CSHARP_PATH"; then
              for ac_prog in mono
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_CILINTERPRETER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_CILINTERPRETER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_CILINTERPRETER="$CSHARP_CILINTERPRETER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_CILINTERPRETER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_CILINTERPRETER=$ac_cv_path_CSHARP_CILINTERPRETER
if test -n "$CSHARP_CILINTERPRETER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_CILINTERPRETER" >&5
echo "${ECHO_T}$CSHARP_CILINTERPRETER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_CILINTERPRETER" && break
done
 # Mono JIT
            else
              for ac_prog in mono
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_CSHARP_CILINTERPRETER+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $CSHARP_CILINTERPRETER in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_CSHARP_CILINTERPRETER="$CSHARP_CILINTERPRETER" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $CSHARP_PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_CSHARP_CILINTERPRETER="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
CSHARP_CILINTERPRETER=$ac_cv_path_CSHARP_CILINTERPRETER
if test -n "$CSHARP_CILINTERPRETER"; then
  { echo "$as_me:$LINENO: result: $CSHARP_CILINTERPRETER" >&5
echo "${ECHO_T}$CSHARP_CILINTERPRETER" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$CSHARP_CILINTERPRETER" && break
done
test -n "$CSHARP_CILINTERPRETER" || CSHARP_CILINTERPRETER=""""
 # Mono JIT
            fi
        else
          if test "csc" = "$CSHARP_COMPILER_NAME"; then
              CSHARP_PATHSEPARATOR="\\\\"
              CSHARPCYGPATH_W='cygpath -w'
          fi
        fi
      fi
    else
      CSHARP_CILINTERPRETER="$CSHARP_BIN"
    fi

    # check CSHARP_CILINTERPRETER
    { echo "$as_me:$LINENO: checking whether $CSHARP_CILINTERPRETER exists" >&5
echo $ECHO_N "checking whether $CSHARP_CILINTERPRETER exists... $ECHO_C" >&6; }
    if test -f "$CSHARP_CILINTERPRETER" ; then
      { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
    else
      { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
      { { echo "$as_me:$LINENO: error: CSharp Compiler $CSHARP_CILINTERPRETER does not exist." >&5
echo "$as_me: error: CSharp Compiler $CSHARP_CILINTERPRETER does not exist." >&2;}
   { (exit 1); exit 1; }; }
    fi

    # set SN/GACUTIL
    if test -z "$CSHARP_PATH"; then
      for ac_prog in sn
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_SN+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $SN in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_SN="$SN" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_SN="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
SN=$ac_cv_path_SN
if test -n "$SN"; then
  { echo "$as_me:$LINENO: result: $SN" >&5
echo "${ECHO_T}$SN" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$SN" && break
done

      for ac_prog in gacutil
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_GACUTIL+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $GACUTIL in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_GACUTIL="$GACUTIL" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_GACUTIL="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
GACUTIL=$ac_cv_path_GACUTIL
if test -n "$GACUTIL"; then
  { echo "$as_me:$LINENO: result: $GACUTIL" >&5
echo "${ECHO_T}$GACUTIL" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$GACUTIL" && break
done

    else
      for ac_prog in sn
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_SN+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $SN in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_SN="$SN" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $CSHARP_PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_SN="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
SN=$ac_cv_path_SN
if test -n "$SN"; then
  { echo "$as_me:$LINENO: result: $SN" >&5
echo "${ECHO_T}$SN" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$SN" && break
done
test -n "$SN" || SN=""""

      for ac_prog in gacutil
do
  # Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_GACUTIL+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $GACUTIL in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_GACUTIL="$GACUTIL" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $CSHARP_PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_GACUTIL="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
GACUTIL=$ac_cv_path_GACUTIL
if test -n "$GACUTIL"; then
  { echo "$as_me:$LINENO: result: $GACUTIL" >&5
echo "${ECHO_T}$GACUTIL" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


  test -n "$GACUTIL" && break
done
test -n "$GACUTIL" || GACUTIL=""""

    fi

    # Cygwin requires the Windows standard (Pascal) calling convention as it is a Windows executable and not a Cygwin built executable
    case $host in
    *-*-cygwin* | *-*-mingw*)
        if test "$GCC" = yes; then
            CSHARP_LDFLAGS=" -mno-cygwin -mthreads -Wl,--add-stdcall-alias"
            CSHARP_CPPFLAGS="-mno-cygwin -mthreads"
        else
            CSHARP_LDFLAGS=""
            CSHARP_CPPFLAGS=""
        fi
        CSHARP_EXT="dll"
        CSHARP_SWIGFLAGS="-DSWIG_CSHARP_NO_WSTRING_HELPER"
        ;;
    *darwin*)
        CSHARP_LDFLAGS="-bundle_loader \"${CSHARP_CILINTERPRETER}\""
        CSHARP_CPPFLAGS=""
        CSHARP_SWIGFLAGS=""
        CSHARP_EXT="so"
        ;;
    *)
        CSHARP_LDFLAGS=""
        CSHARP_CPPFLAGS=""
        CSHARP_SWIGFLAGS=""
        CSHARP_EXT="so"
        ;;
    esac


cat >>confdefs.h <<\_ACEOF
#define USE_CSHARP 1
_ACEOF

    USE_CSHARP=1









  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_CSHARP"



# Make sure to test doxygen *after* java, because there's a dependency on
# in CONFIG_PROG_DOXYGEN on whether --with-java was also given.



# Check whether --with-doxygen was given.
if test "${with_doxygen+set}" = set; then
  withval=$with_doxygen; with_doxygen=$withval
else
  with_doxygen=no
fi


  if test "$with_doxygen" != "no"; then
    if test "$with_doxygen" != "yes"; then


      with_doxygen=`echo $with_doxygen | sed -e 's,\(.*\)/$,\1,g'`

      # Extract the first word of "doxygen", so it can be a program name with args.
set dummy doxygen; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_DOXYGEN+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $DOXYGEN in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_DOXYGEN="$DOXYGEN" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_doxygen/bin $with_doxygen/Contents/Resources $with_doxygen
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_DOXYGEN="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_DOXYGEN" && ac_cv_path_DOXYGEN="no"
  ;;
esac
fi
DOXYGEN=$ac_cv_path_DOXYGEN
if test -n "$DOXYGEN"; then
  { echo "$as_me:$LINENO: result: $DOXYGEN" >&5
echo "${ECHO_T}$DOXYGEN" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    else
            # Extract the first word of "doxygen", so it can be a program name with args.
set dummy doxygen; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_DOXYGEN+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $DOXYGEN in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_DOXYGEN="$DOXYGEN" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_DOXYGEN="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  ;;
esac
fi
DOXYGEN=$ac_cv_path_DOXYGEN
if test -n "$DOXYGEN"; then
  { echo "$as_me:$LINENO: result: $DOXYGEN" >&5
echo "${ECHO_T}$DOXYGEN" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


    fi
  fi

  if test -n "$DOXYGEN" -a "$DOXYGEN" != "no"; then


      { echo "$as_me:$LINENO: checking $DOXYGEN version >= 1.5.8" >&5
echo $ECHO_N "checking $DOXYGEN version >= 1.5.8... $ECHO_C" >&6; }



      rx=`echo 1.5.8 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\1/'`
      ry=`echo 1.5.8 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\2/'`
      rz=`echo 1.5.8 | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\3/'`

      version=`"$DOXYGEN" --version | tr -d '\015'`

      dx=`echo $version | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\1/'`
      dy=`echo $version | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\2/'`
      dz=`echo $version | sed -e 's/\([0-9]*\)\.\([0-9]*\)\.\([0-9]*\).*/\3/'`



      if test $dx -gt $rx \
         || (test $dx -eq $rx -a $dy -gt $ry) \
         || (test $dx -eq $rx -a $dy -eq $ry -a $dz -ge $rz); then
        { echo "$as_me:$LINENO: result: yes (found $dx.$dy.$dz)" >&5
echo "${ECHO_T}yes (found $dx.$dy.$dz)" >&6; }
      else
        { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
        { { echo "$as_me:$LINENO: error: Need DOXYGEN version 1.5.8, but only found version $dx.$dy.$dz." >&5
echo "$as_me: error: Need DOXYGEN version 1.5.8, but only found version $dx.$dy.$dz." >&2;}
   { (exit 1); exit 1; }; }
      fi





cat >>confdefs.h <<\_ACEOF
#define USE_DOXYGEN 1
_ACEOF

    USE_DOXYGEN=1



    if test "$with_java" != "no"; then
      { echo "$as_me:$LINENO: checking for javadoc" >&5
echo $ECHO_N "checking for javadoc... $ECHO_C" >&6; }
      if ! test -e $JAVADOC_JAR; then
        { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
        { { echo "$as_me:$LINENO: error: *** missing $JAVADOC_JAR - please install first or check config.log ***" >&5
echo "$as_me: error: *** missing $JAVADOC_JAR - please install first or check config.log ***" >&2;}
   { (exit 1); exit 1; }; }
      else
        { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
      fi
    fi

  else
    DOXYGEN="no-doxygen-found"
  fi






ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu




{ echo "$as_me:$LINENO: checking for isnan in -lm" >&5
echo $ECHO_N "checking for isnan in -lm... $ECHO_C" >&6; }
if test "${ac_cv_lib_m_isnan+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_check_lib_save_LIBS=$LIBS
LIBS="-lm  $LIBS"
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply.  */
#ifdef __cplusplus
extern "C"
#endif
char isnan ();
int
main ()
{
return isnan ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
  ac_cv_lib_m_isnan=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_lib_m_isnan=no
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
{ echo "$as_me:$LINENO: result: $ac_cv_lib_m_isnan" >&5
echo "${ECHO_T}$ac_cv_lib_m_isnan" >&6; }
if test $ac_cv_lib_m_isnan = yes; then
  cat >>confdefs.h <<_ACEOF
#define HAVE_LIBM 1
_ACEOF

  LIBS="-lm $LIBS"

fi




{ echo "$as_me:$LINENO: checking for grep that handles long lines and -e" >&5
echo $ECHO_N "checking for grep that handles long lines and -e... $ECHO_C" >&6; }
if test "${ac_cv_path_GREP+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  # Extract the first word of "grep ggrep" to use in msg output
if test -z "$GREP"; then
set dummy grep ggrep; ac_prog_name=$2
if test "${ac_cv_path_GREP+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_path_GREP_found=false
# Loop through the user's path and test for each of PROGNAME-LIST
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_prog in grep ggrep; do
  for ac_exec_ext in '' $ac_executable_extensions; do
    ac_path_GREP="$as_dir/$ac_prog$ac_exec_ext"
    { test -f "$ac_path_GREP" && $as_test_x "$ac_path_GREP"; } || continue
    # Check for GNU ac_path_GREP and select it if it is found.
  # Check for GNU $ac_path_GREP
case `"$ac_path_GREP" --version 2>&1` in
*GNU*)
  ac_cv_path_GREP="$ac_path_GREP" ac_path_GREP_found=:;;
*)
  ac_count=0
  echo $ECHO_N "0123456789$ECHO_C" >"conftest.in"
  while :
  do
    cat "conftest.in" "conftest.in" >"conftest.tmp"
    mv "conftest.tmp" "conftest.in"
    cp "conftest.in" "conftest.nl"
    echo 'GREP' >> "conftest.nl"
    "$ac_path_GREP" -e 'GREP$' -e '-(cannot match)-' < "conftest.nl" >"conftest.out" 2>/dev/null || break
    diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
    ac_count=`expr $ac_count + 1`
    if test $ac_count -gt ${ac_path_GREP_max-0}; then
      # Best one so far, save it but keep looking for a better one
      ac_cv_path_GREP="$ac_path_GREP"
      ac_path_GREP_max=$ac_count
    fi
    # 10*(2^10) chars as input seems more than enough
    test $ac_count -gt 10 && break
  done
  rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
esac


    $ac_path_GREP_found && break 3
  done
done

done
IFS=$as_save_IFS


fi

GREP="$ac_cv_path_GREP"
if test -z "$GREP"; then
  { { echo "$as_me:$LINENO: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
echo "$as_me: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
   { (exit 1); exit 1; }; }
fi

else
  ac_cv_path_GREP=$GREP
fi


fi
{ echo "$as_me:$LINENO: result: $ac_cv_path_GREP" >&5
echo "${ECHO_T}$ac_cv_path_GREP" >&6; }
 GREP="$ac_cv_path_GREP"


{ echo "$as_me:$LINENO: checking for egrep" >&5
echo $ECHO_N "checking for egrep... $ECHO_C" >&6; }
if test "${ac_cv_path_EGREP+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  if echo a | $GREP -E '(a|b)' >/dev/null 2>&1
   then ac_cv_path_EGREP="$GREP -E"
   else
     # Extract the first word of "egrep" to use in msg output
if test -z "$EGREP"; then
set dummy egrep; ac_prog_name=$2
if test "${ac_cv_path_EGREP+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_path_EGREP_found=false
# Loop through the user's path and test for each of PROGNAME-LIST
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_prog in egrep; do
  for ac_exec_ext in '' $ac_executable_extensions; do
    ac_path_EGREP="$as_dir/$ac_prog$ac_exec_ext"
    { test -f "$ac_path_EGREP" && $as_test_x "$ac_path_EGREP"; } || continue
    # Check for GNU ac_path_EGREP and select it if it is found.
  # Check for GNU $ac_path_EGREP
case `"$ac_path_EGREP" --version 2>&1` in
*GNU*)
  ac_cv_path_EGREP="$ac_path_EGREP" ac_path_EGREP_found=:;;
*)
  ac_count=0
  echo $ECHO_N "0123456789$ECHO_C" >"conftest.in"
  while :
  do
    cat "conftest.in" "conftest.in" >"conftest.tmp"
    mv "conftest.tmp" "conftest.in"
    cp "conftest.in" "conftest.nl"
    echo 'EGREP' >> "conftest.nl"
    "$ac_path_EGREP" 'EGREP$' < "conftest.nl" >"conftest.out" 2>/dev/null || break
    diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
    ac_count=`expr $ac_count + 1`
    if test $ac_count -gt ${ac_path_EGREP_max-0}; then
      # Best one so far, save it but keep looking for a better one
      ac_cv_path_EGREP="$ac_path_EGREP"
      ac_path_EGREP_max=$ac_count
    fi
    # 10*(2^10) chars as input seems more than enough
    test $ac_count -gt 10 && break
  done
  rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
esac


    $ac_path_EGREP_found && break 3
  done
done

done
IFS=$as_save_IFS


fi

EGREP="$ac_cv_path_EGREP"
if test -z "$EGREP"; then
  { { echo "$as_me:$LINENO: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
echo "$as_me: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
   { (exit 1); exit 1; }; }
fi

else
  ac_cv_path_EGREP=$EGREP
fi


   fi
fi
{ echo "$as_me:$LINENO: result: $ac_cv_path_EGREP" >&5
echo "${ECHO_T}$ac_cv_path_EGREP" >&6; }
 EGREP="$ac_cv_path_EGREP"


{ echo "$as_me:$LINENO: checking for ANSI C header files" >&5
echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6; }
if test "${ac_cv_header_stdc+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <stdlib.h>
#include <stdarg.h>
#include <string.h>
#include <float.h>

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_header_stdc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_header_stdc=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

if test $ac_cv_header_stdc = yes; then
  # SunOS 4.x string.h does not declare mem*, contrary to ANSI.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <string.h>

_ACEOF
if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
  $EGREP "memchr" >/dev/null 2>&1; then
  :
else
  ac_cv_header_stdc=no
fi
rm -f conftest*

fi

if test $ac_cv_header_stdc = yes; then
  # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <stdlib.h>

_ACEOF
if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
  $EGREP "free" >/dev/null 2>&1; then
  :
else
  ac_cv_header_stdc=no
fi
rm -f conftest*

fi

if test $ac_cv_header_stdc = yes; then
  # /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi.
  if test "$cross_compiling" = yes; then
  :
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <ctype.h>
#include <stdlib.h>
#if ((' ' & 0x0FF) == 0x020)
# define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
# define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
#else
# define ISLOWER(c) \
		   (('a' <= (c) && (c) <= 'i') \
		     || ('j' <= (c) && (c) <= 'r') \
		     || ('s' <= (c) && (c) <= 'z'))
# define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
#endif

#define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
int
main ()
{
  int i;
  for (i = 0; i < 256; i++)
    if (XOR (islower (i), ISLOWER (i))
	|| toupper (i) != TOUPPER (i))
      return 2;
  return 0;
}
_ACEOF
rm -f conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
  { (case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_try") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
  :
else
  echo "$as_me: program exited with status $ac_status" >&5
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

( exit $ac_status )
ac_cv_header_stdc=no
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
fi


fi
fi
{ echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
echo "${ECHO_T}$ac_cv_header_stdc" >&6; }
if test $ac_cv_header_stdc = yes; then

cat >>confdefs.h <<\_ACEOF
#define STDC_HEADERS 1
_ACEOF

fi

# On IRIX 5.3, sys/types and inttypes.h are conflicting.









for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \
		  inttypes.h stdint.h unistd.h
do
as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
{ echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default

#include <$ac_header>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  eval "$as_ac_Header=yes"
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	eval "$as_ac_Header=no"
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }
if test `eval echo '${'$as_ac_Header'}'` = yes; then
  cat >>confdefs.h <<_ACEOF
#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF

fi

done




# Check whether --with-expat was given.
if test "${with_expat+set}" = set; then
  withval=$with_expat; with_expat=$withval
else
  with_expat=no
fi


  if test $with_expat != no; then

    ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu


    EXPAT_LIBS="-lexpat"

    if test $with_expat != yes; then
      expat_root="$with_expat"
      expat_lib_path=$expat_root/lib

  RUN_LDPATH="$RUN_LDPATH:$expat_lib_path"


      EXPAT_CPPFLAGS="-I$expat_root/include"
      EXPAT_LDFLAGS="-L$expat_lib_path"
    else


      case $host in
      *darwin*)
        if test -e "/sw"; then
          expat_root="/sw"
          expat_lib_path="/sw/lib"

  RUN_LDPATH="$RUN_LDPATH:$expat_lib_path"

          EXPAT_CPPFLAGS="-I$expat_root/include"
          EXPAT_LDFLAGS="-L$expat_lib_path"
        fi
	;;
      esac

                fi


    tmp_CFLAGS=$CFLAGS
    tmp_CPPFLAGS=$CPPFLAGS
    tmp_LDFLAGS=$LDFLAGS
    tmp_LIBS="$LIBS"
    CPPFLAGS="$CPPFLAGS $EXPAT_CPPFLAGS"
    LDFLAGS="$LDFLAGS $EXPAT_LDFLAGS"
    LIBS="$LIBS $EXPAT_LIBS"

    expat_found=no

    { echo "$as_me:$LINENO: checking for XML_ParserCreate in -lexpat" >&5
echo $ECHO_N "checking for XML_ParserCreate in -lexpat... $ECHO_C" >&6; }
if test "${ac_cv_lib_expat_XML_ParserCreate+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_check_lib_save_LIBS=$LIBS
LIBS="-lexpat  $LIBS"
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply.  */
#ifdef __cplusplus
extern "C"
#endif
char XML_ParserCreate ();
int
main ()
{
return XML_ParserCreate ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
  ac_cv_lib_expat_XML_ParserCreate=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_lib_expat_XML_ParserCreate=no
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
{ echo "$as_me:$LINENO: result: $ac_cv_lib_expat_XML_ParserCreate" >&5
echo "${ECHO_T}$ac_cv_lib_expat_XML_ParserCreate" >&6; }
if test $ac_cv_lib_expat_XML_ParserCreate = yes; then
  expat_found=yes
else
  expat_found=no
fi


    if test $expat_found = no; then
      { { echo "$as_me:$LINENO: error: Could not find the Expat XML library." >&5
echo "$as_me: error: Could not find the Expat XML library." >&2;}
   { (exit 1); exit 1; }; }
    fi


for ac_header in expat.h
do
as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  { echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }
else
  # Is the header compilable?
{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
#include <$ac_header>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_header_compiler=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_header_compiler=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
echo "${ECHO_T}$ac_header_compiler" >&6; }

# Is the header present?
{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <$ac_header>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  ac_header_preproc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  ac_header_preproc=no
fi

rm -f conftest.err conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
echo "${ECHO_T}$ac_header_preproc" >&6; }

# So?  What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
  yes:no: )
    { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
    ac_header_preproc=yes
    ;;
  no:yes:* )
    { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     check for missing prerequisite headers?" >&5
echo "$as_me: WARNING: $ac_header:     check for missing prerequisite headers?" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&5
echo "$as_me: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
    ( cat <<\_ASBOX
## --------------------------------------- ##
## Report this to libsbml-team@caltech.edu ##
## --------------------------------------- ##
_ASBOX
     ) | sed "s/^/$as_me: WARNING:     /" >&2
    ;;
esac
{ echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  eval "$as_ac_Header=\$ac_header_preproc"
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }

fi
if test `eval echo '${'$as_ac_Header'}'` = yes; then
  cat >>confdefs.h <<_ACEOF
#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF
 expat_found=yes
else
  expat_found=no
fi

done


    if test $expat_found = no; then
      { { echo "$as_me:$LINENO: error: Could not find the file expat.h." >&5
echo "$as_me: error: Could not find the file expat.h." >&2;}
   { (exit 1); exit 1; }; }
    fi

    min_expat_version=1.95.8
    { echo "$as_me:$LINENO: checking for Expat version >= $min_expat_version" >&5
echo $ECHO_N "checking for Expat version >= $min_expat_version... $ECHO_C" >&6; }

    # Set up LD_LIBRARY_PATH/DYLD_LIBRARY_PATH for compiling the
    # test program below

    tmp_library_path=""
    case $host in
    *darwin*)
      tmp_library_path="$DYLD_LIBRARY_PATH"
      DYLD_LIBRARY_PATH="$DYLD_LIBRARY_PATH;$expat_lib_path"
      export DYLD_LIBRARY_PATH
      ;;
    *)
      tmp_library_path="$LD_LIBRARY_PATH"
      LD_LIBRARY_PATH="$LD_LIBRARY_PATH;$expat_lib_path"
      export LD_LIBRARY_PATH
      ;;
    esac

            rm -f conf.expat-test
    if test "$cross_compiling" = yes; then
  { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
See \`config.log' for more details." >&5
echo "$as_me: error: cannot run test program while cross compiling
See \`config.log' for more details." >&2;}
   { (exit 1); exit 1; }; }
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <expat.h>

int main ()
{
  int major, minor, micro;
  char *tmp_version;
  XML_Expat_Version expat_version = XML_ExpatVersionInfo();

  system ("touch conf.expat-test");

  /* HP/UX 9 writes to sscanf strings */
  tmp_version = strdup("$min_expat_version");
  if (sscanf(tmp_version, "%d.%d.%d", &major, &minor, &micro) != 3)
    {
      printf("%s, bad version string\n", "$min_expat_version");
      return 1;
    }

  if ((XML_MAJOR_VERSION != expat_version.major) ||
      (XML_MINOR_VERSION != expat_version.minor) ||
      (XML_MICRO_VERSION != expat_version.micro))
    {
      printf("\n*** The Expat header file (version %d.%d.%d) does not match\n",
             XML_MAJOR_VERSION, XML_MINOR_VERSION, XML_MICRO_VERSION);
      printf("*** the Expat library found (version %d.%d.%d).\n",
             expat_version.major, expat_version.minor, expat_version.micro);
      return 1;
    }

  if ((expat_version.major > major) ||
      ((expat_version.major == major) && (expat_version.minor > minor)) ||
      ((expat_version.major == major) && (expat_version.minor == minor)
        && (expat_version.micro >= micro)))
    {
      return 0;
    }
  else
    {
      printf("\n*** An old version of Expat (%d.%d.%d) was found.\n",
             expat_version.major, expat_version.minor, expat_version.micro);
      printf("*** You need a version of Expat that's at least %d.%d.%d.\n",
	     major, minor, micro);
      printf("***\n");
      printf("*** If you've already installed a sufficiently new version,\n");
      printf("*** this error probably means that the wrong copy of the\n");
      printf("*** Expat library and header file are being found.  Re-run\n");
      printf("*** configure with the --with-expat=PATH option to specify\n");
      printf("*** the prefix where the correct version is installed.\n");
    }

  return 1;
}

_ACEOF
rm -f conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
  { (case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_try") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
  { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
else
  echo "$as_me: program exited with status $ac_status" >&5
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

( exit $ac_status )
no_expat=yes
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
fi



    CFLAGS="$tmp_CFLAGS"
    LDFLAGS="$tmp_LDFLAGS"
    LIBS="$tmp_LIBS"

    if test "x$no_expat" = x ; then
      :
    else
      if test -f conf.expat-test ; then
	:
      else
        echo "*** Could not run Expat test program, trying to find out why..."

        CFLAGS="$EXPAT_CPPFLAGS $CFLAGS"
        LDFLAGS="$EXPAT_LDFLAGS $LDFLAGS"
        LIBS="$EXPAT_LIBS $LIBS"

        cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

#include <stdio.h>
#include <stdlib.h>
#include <expat.h>

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
   echo "*** The test program compiled, but did not run.  This usually"
          echo "*** means that the run-time linker is not finding expat.  You"
          echo "*** will need to set your LD_LIBRARY_PATH environment variable,"
          echo "*** or edit /etc/ld.so.conf to point to the installed location."
          echo "*** Also, make sure you have run ldconfig if that is required"
          echo "*** on your operating system."
          echo "***"
          echo "*** If you have an old version of Expat installed, it is best"
          echo "*** to remove it, although you may also be able to get things"
          echo "*** to work by modifying you value of LD_LIBRARY_PATH."
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	 echo "*** The test program failed to compile or link. See the file"
          echo "*** 'config.log' for more information about what happened."
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext

        CFLAGS="$tmp_CFLAGS"
        LDFLAGS="$tmp_LDFLAGS"
        LIBS="$tmp_LIBS"

      fi

      tmp_CFLAGS=""
      tmp_LDFLAGS=""
      tmp_LIBS=""

      rm -f conf.expat-test
      { { echo "$as_me:$LINENO: error: Expat not found" >&5
echo "$as_me: error: Expat not found" >&2;}
   { (exit 1); exit 1; }; }
    fi

    rm -f conf.expat-test

    CPPFLAGS=$tmp_CPPFLAGS
    LDFLAGS=$tmp_LDFLAGS
    LIBS="$tmp_LIBS"
    case $host in
    *darwin*)
      DYLD_LIBRARY_PATH=$tmp_library_path
      export DYLD_LIBRARY_PATH
      ;;
    *)
      LD_LIBRARY_PATH=$tmp_library_path
      export LD_LIBRARY_PATH
      ;;
    esac

    ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu



cat >>confdefs.h <<\_ACEOF
#define USE_EXPAT 1
_ACEOF

    USE_EXPAT=1






  fi

  if test $with_expat != no; then
    with_xerces=no
  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_EXPAT"



ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
{ echo "$as_me:$LINENO: checking how to run the C++ preprocessor" >&5
echo $ECHO_N "checking how to run the C++ preprocessor... $ECHO_C" >&6; }
if test -z "$CXXCPP"; then
  if test "${ac_cv_prog_CXXCPP+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
      # Double quotes because CXXCPP needs to be expanded
    for CXXCPP in "$CXX -E" "/lib/cpp"
    do
      ac_preproc_ok=false
for ac_cxx_preproc_warn_flag in '' yes
do
  # Use a header file that comes with gcc, so configuring glibc
  # with a fresh cross-compiler works.
  # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
  # <limits.h> exists even on freestanding compilers.
  # On the NeXT, cc -E runs the code through the compiler's parser,
  # not just through cpp. "Syntax error" is here to catch this case.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif
		     Syntax error
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       }; then
  :
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  # Broken: fails on valid input.
continue
fi

rm -f conftest.err conftest.$ac_ext

  # OK, works on sane cases.  Now check whether nonexistent headers
  # can be detected and how.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <ac_nonexistent.h>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       }; then
  # Broken: success on invalid input.
continue
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  # Passes both tests.
ac_preproc_ok=:
break
fi

rm -f conftest.err conftest.$ac_ext

done
# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
rm -f conftest.err conftest.$ac_ext
if $ac_preproc_ok; then
  break
fi

    done
    ac_cv_prog_CXXCPP=$CXXCPP

fi
  CXXCPP=$ac_cv_prog_CXXCPP
else
  ac_cv_prog_CXXCPP=$CXXCPP
fi
{ echo "$as_me:$LINENO: result: $CXXCPP" >&5
echo "${ECHO_T}$CXXCPP" >&6; }
ac_preproc_ok=false
for ac_cxx_preproc_warn_flag in '' yes
do
  # Use a header file that comes with gcc, so configuring glibc
  # with a fresh cross-compiler works.
  # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
  # <limits.h> exists even on freestanding compilers.
  # On the NeXT, cc -E runs the code through the compiler's parser,
  # not just through cpp. "Syntax error" is here to catch this case.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif
		     Syntax error
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       }; then
  :
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  # Broken: fails on valid input.
continue
fi

rm -f conftest.err conftest.$ac_ext

  # OK, works on sane cases.  Now check whether nonexistent headers
  # can be detected and how.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <ac_nonexistent.h>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       }; then
  # Broken: success on invalid input.
continue
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  # Passes both tests.
ac_preproc_ok=:
break
fi

rm -f conftest.err conftest.$ac_ext

done
# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
rm -f conftest.err conftest.$ac_ext
if $ac_preproc_ok; then
  :
else
  { { echo "$as_me:$LINENO: error: C++ preprocessor \"$CXXCPP\" fails sanity check
See \`config.log' for more details." >&5
echo "$as_me: error: C++ preprocessor \"$CXXCPP\" fails sanity check
See \`config.log' for more details." >&2;}
   { (exit 1); exit 1; }; }
fi

ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_cxx_compiler_gnu




# Check whether --with-xerces was given.
if test "${with_xerces+set}" = set; then
  withval=$with_xerces; with_xerces="$withval"
else
  with_xerces=no
fi


  if test $with_xerces != no; then

    { echo "$as_me:$LINENO: checking for Apache's Xerces-C++ XML library" >&5
echo $ECHO_N "checking for Apache's Xerces-C++ XML library... $ECHO_C" >&6; }
    { echo "$as_me:$LINENO: result: " >&5
echo "${ECHO_T}" >&6; }

    ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_cxx_compiler_gnu


    if test $with_xerces != yes; then
      xerces_root="$with_xerces"
      xerces_lib_path=$xerces_root/lib

  RUN_LDPATH="$RUN_LDPATH:$xerces_lib_path"


      XERCES_CPPFLAGS="-I$xerces_root/include"
      XERCES_LDFLAGS="-L$xerces_lib_path"
    else


      case $host in
      *darwin*)
        if test -e "/sw"; then
          xerces_root="/sw"
          xerces_lib_path="/sw/lib"

  RUN_LDPATH="$RUN_LDPATH:$xerces_lib_path"

          XERCES_CPPFLAGS="-I$xerces_root/include"
          XERCES_LDFLAGS="-L$xerces_lib_path"
        fi
	;;
      esac

                fi

    XERCES_LIBS="-lxerces-c"


    tmp_CPPFLAGS=$CPPFLAGS
    tmp_LDFLAGS=$LDFLAGS
    tmp_LIBS=$LIBS
    CPPFLAGS="$CPPFLAGS $XERCES_CPPFLAGS"
    LDFLAGS="$LDFLAGS $XERCES_LDFLAGS"
    LIBS="$LIBS $XERCES_LIBS"

    if test "${ac_cv_header_xercesc_util_XercesVersion_hpp+set}" = set; then
  { echo "$as_me:$LINENO: checking for xercesc/util/XercesVersion.hpp" >&5
echo $ECHO_N "checking for xercesc/util/XercesVersion.hpp... $ECHO_C" >&6; }
if test "${ac_cv_header_xercesc_util_XercesVersion_hpp+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
fi
{ echo "$as_me:$LINENO: result: $ac_cv_header_xercesc_util_XercesVersion_hpp" >&5
echo "${ECHO_T}$ac_cv_header_xercesc_util_XercesVersion_hpp" >&6; }
else
  # Is the header compilable?
{ echo "$as_me:$LINENO: checking xercesc/util/XercesVersion.hpp usability" >&5
echo $ECHO_N "checking xercesc/util/XercesVersion.hpp usability... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
#include <xercesc/util/XercesVersion.hpp>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_header_compiler=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_header_compiler=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
echo "${ECHO_T}$ac_header_compiler" >&6; }

# Is the header present?
{ echo "$as_me:$LINENO: checking xercesc/util/XercesVersion.hpp presence" >&5
echo $ECHO_N "checking xercesc/util/XercesVersion.hpp presence... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <xercesc/util/XercesVersion.hpp>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       }; then
  ac_header_preproc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  ac_header_preproc=no
fi

rm -f conftest.err conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
echo "${ECHO_T}$ac_header_preproc" >&6; }

# So?  What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
  yes:no: )
    { echo "$as_me:$LINENO: WARNING: xercesc/util/XercesVersion.hpp: accepted by the compiler, rejected by the preprocessor!" >&5
echo "$as_me: WARNING: xercesc/util/XercesVersion.hpp: accepted by the compiler, rejected by the preprocessor!" >&2;}
    { echo "$as_me:$LINENO: WARNING: xercesc/util/XercesVersion.hpp: proceeding with the compiler's result" >&5
echo "$as_me: WARNING: xercesc/util/XercesVersion.hpp: proceeding with the compiler's result" >&2;}
    ac_header_preproc=yes
    ;;
  no:yes:* )
    { echo "$as_me:$LINENO: WARNING: xercesc/util/XercesVersion.hpp: present but cannot be compiled" >&5
echo "$as_me: WARNING: xercesc/util/XercesVersion.hpp: present but cannot be compiled" >&2;}
    { echo "$as_me:$LINENO: WARNING: xercesc/util/XercesVersion.hpp:     check for missing prerequisite headers?" >&5
echo "$as_me: WARNING: xercesc/util/XercesVersion.hpp:     check for missing prerequisite headers?" >&2;}
    { echo "$as_me:$LINENO: WARNING: xercesc/util/XercesVersion.hpp: see the Autoconf documentation" >&5
echo "$as_me: WARNING: xercesc/util/XercesVersion.hpp: see the Autoconf documentation" >&2;}
    { echo "$as_me:$LINENO: WARNING: xercesc/util/XercesVersion.hpp:     section \"Present But Cannot Be Compiled\"" >&5
echo "$as_me: WARNING: xercesc/util/XercesVersion.hpp:     section \"Present But Cannot Be Compiled\"" >&2;}
    { echo "$as_me:$LINENO: WARNING: xercesc/util/XercesVersion.hpp: proceeding with the preprocessor's result" >&5
echo "$as_me: WARNING: xercesc/util/XercesVersion.hpp: proceeding with the preprocessor's result" >&2;}
    { echo "$as_me:$LINENO: WARNING: xercesc/util/XercesVersion.hpp: in the future, the compiler will take precedence" >&5
echo "$as_me: WARNING: xercesc/util/XercesVersion.hpp: in the future, the compiler will take precedence" >&2;}
    ( cat <<\_ASBOX
## --------------------------------------- ##
## Report this to libsbml-team@caltech.edu ##
## --------------------------------------- ##
_ASBOX
     ) | sed "s/^/$as_me: WARNING:     /" >&2
    ;;
esac
{ echo "$as_me:$LINENO: checking for xercesc/util/XercesVersion.hpp" >&5
echo $ECHO_N "checking for xercesc/util/XercesVersion.hpp... $ECHO_C" >&6; }
if test "${ac_cv_header_xercesc_util_XercesVersion_hpp+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_cv_header_xercesc_util_XercesVersion_hpp=$ac_header_preproc
fi
{ echo "$as_me:$LINENO: result: $ac_cv_header_xercesc_util_XercesVersion_hpp" >&5
echo "${ECHO_T}$ac_cv_header_xercesc_util_XercesVersion_hpp" >&6; }

fi
if test $ac_cv_header_xercesc_util_XercesVersion_hpp = yes; then
  :
else
  { { echo "$as_me:$LINENO: error: unable to find Xerces-C++ header files" >&5
echo "$as_me: error: unable to find Xerces-C++ header files" >&2;}
   { (exit 1); exit 1; }; }
fi



    # Set up LD_LIBRARY_PATH/DYLD_LIBRARY_PATH for compiling the
    # test program below

    tmp_library_path=""
    case $host in
    *darwin*)
      tmp_library_path="$DYLD_LIBRARY_PATH"
      DYLD_LIBRARY_PATH="$DYLD_LIBRARY_PATH;$xerces_lib_path"
      export DYLD_LIBRARY_PATH
      ;;
    *)
      tmp_library_path="$LD_LIBRARY_PATH"
      LD_LIBRARY_PATH="$LD_LIBRARY_PATH;$xerces_lib_path"
      export LD_LIBRARY_PATH
      ;;
    esac

    { echo "$as_me:$LINENO: checking Xerces-C++ library version" >&5
echo $ECHO_N "checking Xerces-C++ library version... $ECHO_C" >&6; }
    cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <xercesc/util/XercesVersion.hpp>
int
main ()
{

#if  _XERCES_VERSION == 20600
#error cannot use Xerces version 2.6.0
#else
exit(0);
#endif

  ;
  return 0;
}
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       }; then
  { echo "$as_me:$LINENO: result: OK" >&5
echo "${ECHO_T}OK" >&6; }
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

   echo "*** Xerces-C++ version 2.6.0 has serious bugs and cannot be"
	echo "*** used by libSBML.  Please use either versions 2.4 - 2.5 or"
	echo "*** version 2.7.0"
	{ { echo "$as_me:$LINENO: error: unable to use this version of Xerces-C++ library" >&5
echo "$as_me: error: unable to use this version of Xerces-C++ library" >&2;}
   { (exit 1); exit 1; }; }
fi

rm -f conftest.err conftest.$ac_ext

    { echo "$as_me:$LINENO: checking ability to link with Xerces-C++ library" >&5
echo $ECHO_N "checking ability to link with Xerces-C++ library... $ECHO_C" >&6; }
    cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

#include <xercesc/util/XercesDefs.hpp>
#include <xercesc/util/PlatformUtils.hpp>
#ifndef XERCES_HAS_CPP_NAMESPACE
#define XERCES_CPP_NAMESPACE_QUALIFIER
#endif

int
main ()
{
XERCES_CPP_NAMESPACE_QUALIFIER XMLPlatformUtils::Initialize();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_cxx_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
  { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	{ { echo "$as_me:$LINENO: error: unable to link with the Xerces-C++ XML library." >&5
echo "$as_me: error: unable to link with the Xerces-C++ XML library." >&2;}
   { (exit 1); exit 1; }; }
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext

    CPPFLAGS=$tmp_CPPFLAGS
    LDFLAGS=$tmp_LDFLAGS
    LIBS=$tmp_LIBS
    case $host in
    *darwin*)
      DYLD_LIBRARY_PATH=$tmp_library_path
      export DYLD_LIBRARY_PATH
      ;;
    *)
      LD_LIBRARY_PATH=$tmp_library_path
      export LD_LIBRARY_PATH
      ;;
    esac

    ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu



cat >>confdefs.h <<\_ACEOF
#define USE_XERCES 1
_ACEOF

    USE_XERCES=1






  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_XERCES"




# Check whether --with-libxml was given.
if test "${with_libxml+set}" = set; then
  withval=$with_libxml; with_libxml="$withval"
else
  with_libxml=yes
fi


  if test "$with_expat" != "no" -o "$with_xerces" != "no"; then
    with_libxml=no
  fi

  if test "$with_libxml" != "no"; then

    if test "$with_libxml" != "yes"; then
      xml_config_args="$xml_config_args --prefix=$with_libxml"
      if test -n "$XML2_CONFIG" ; then
	        XML2_CONFIG=$with_libxml/bin/xml2-config
      else
        	        # Extract the first word of "xml2-config", so it can be a program name with args.
set dummy xml2-config; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_XML2_CONFIG+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $XML2_CONFIG in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_XML2_CONFIG="$XML2_CONFIG" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $with_libxml/bin
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_XML2_CONFIG="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_XML2_CONFIG" && ac_cv_path_XML2_CONFIG="no"
  ;;
esac
fi
XML2_CONFIG=$ac_cv_path_XML2_CONFIG
if test -n "$XML2_CONFIG"; then
  { echo "$as_me:$LINENO: result: $XML2_CONFIG" >&5
echo "${ECHO_T}$XML2_CONFIG" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      fi
    else
            if test x${XML2_CONFIG+set} != xset ; then
                # Extract the first word of "xml2-config", so it can be a program name with args.
set dummy xml2-config; ac_word=$2
{ echo "$as_me:$LINENO: checking for $ac_word" >&5
echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
if test "${ac_cv_path_XML2_CONFIG+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  case $XML2_CONFIG in
  [\\/]* | ?:[\\/]*)
  ac_cv_path_XML2_CONFIG="$XML2_CONFIG" # Let the user override the test with a path.
  ;;
  *)
  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  for ac_exec_ext in '' $ac_executable_extensions; do
  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
    ac_cv_path_XML2_CONFIG="$as_dir/$ac_word$ac_exec_ext"
    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
    break 2
  fi
done
done
IFS=$as_save_IFS

  test -z "$ac_cv_path_XML2_CONFIG" && ac_cv_path_XML2_CONFIG="no"
  ;;
esac
fi
XML2_CONFIG=$ac_cv_path_XML2_CONFIG
if test -n "$XML2_CONFIG"; then
  { echo "$as_me:$LINENO: result: $XML2_CONFIG" >&5
echo "${ECHO_T}$XML2_CONFIG" >&6; }
else
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
fi


      fi
    fi

    libxml_lib_path=$with_libxml/lib

    ac_save_CPPFLAGS="$CPPFLAGS"
    ac_save_LIBS="$LIBS"

    if test "$XML2_CONFIG" = "no"; then
      echo "*** Could not find 'xml2-config' in directory $with_libxml/bin/."
      echo "*** Please check that the PATH supplied to --with-libxml=PATH"
      echo "*** is of the form '/usr/local' and not '/usr/local/lib'; in"
      echo "*** other words, omit the 'lib' part of the name.  The 'configure'"
      echo "*** utility will append 'lib' to the given path automatically."
      { { echo "$as_me:$LINENO: error: could not find xml2-config in $with_libxml/bin" >&5
echo "$as_me: error: could not find xml2-config in $with_libxml/bin" >&2;}
   { (exit 1); exit 1; }; }
    fi

    min_xml_version=2.6.16
    { echo "$as_me:$LINENO: checking for libxml2 - version >= $min_xml_version" >&5
echo $ECHO_N "checking for libxml2 - version >= $min_xml_version... $ECHO_C" >&6; }
    no_xml=""
    if test "$XML2_CONFIG" = "no" ; then
      no_xml=yes
    else
      LIBXML_CPPFLAGS=`$XML2_CONFIG $xml_config_args --cflags`
      LIBXML_LIBS=`$XML2_CONFIG $xml_config_args --libs`
      ver=`$XML2_CONFIG $xml_config_args --version`
      xml_config_major_version=`echo $ver | sed 's/\([0-9]*\).\([0-9]*\).\([0-9]*\)/\1/'`
      xml_config_minor_version=`echo $ver | sed 's/\([0-9]*\).\([0-9]*\).\([0-9]*\)/\2/'`
      xml_config_micro_version=`echo $ver | sed 's/\([0-9]*\).\([0-9]*\).\([0-9]*\)/\3/'`

      CPPFLAGS="$CPPFLAGS $LIBXML_CPPFLAGS"
      LIBS="$LIBXML_LIBS $LIBS"

      # Set up LD_LIBRARY_PATH/DYLD_LIBRARY_PATH for compiling the
      # test program below

      tmp_library_path=""
      case $host in
      *darwin*)
        tmp_library_path="$DYLD_LIBRARY_PATH"
        DYLD_LIBRARY_PATH="$DYLD_LIBRARY_PATH;$libxml_lib_path"
        export DYLD_LIBRARY_PATH
        ;;
      *)
        tmp_library_path="$LD_LIBRARY_PATH"
        LD_LIBRARY_PATH="$LD_LIBRARY_PATH;$libxml_lib_path"
        export LD_LIBRARY_PATH
        ;;
      esac


      rm -f conf.xmltest
      if test "$cross_compiling" = yes; then
  echo $ac_n "cross compiling; assumed OK... $ac_c"
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

#include <stdlib.h>
#include <stdio.h>
#include <string.h>
#include <libxml/xmlversion.h>

int
main()
{
  int xml_major_version, xml_minor_version, xml_micro_version;
  int major, minor, micro;
  char *tmp_version;

  system("touch conf.xmltest");

  /* Capture xml2-config output via autoconf/configure variables */

  /* HP/UX 9 writes to sscanf strings */
  tmp_version = (char *)strdup("$min_xml_version");
  if (sscanf(tmp_version, "%d.%d.%d", &major, &minor, &micro) != 3) {
     printf("%s, bad version string from xml2-config\n", "$min_xml_version");
     exit(1);
   }
   free(tmp_version);

   /* Capture the version information from the header files */
   tmp_version = (char *)strdup(LIBXML_DOTTED_VERSION);
   if (sscanf(tmp_version, "%d.%d.%d", &xml_major_version,
              &xml_minor_version, &xml_micro_version) != 3) {
     printf("%s, bad version string from libxml includes\n",
            "LIBXML_DOTTED_VERSION");
     exit(1);
   }
   free(tmp_version);

  /* Compare xml2-config output to the libxml headers */

  if ((xml_major_version != $xml_config_major_version) ||
      (xml_minor_version != $xml_config_minor_version) ||
      (xml_micro_version != $xml_config_micro_version))
    {
      printf("*** libxml header files (version %d.%d.%d) do not match\n",
             xml_major_version, xml_minor_version, xml_micro_version);
      printf("*** xml2-config (version %d.%d.%d)\n",
             $xml_config_major_version, $xml_config_minor_version,
             $xml_config_micro_version);
      return 1;
    }

  /* Compare the headers to the library to make sure we match */

  /* Less than ideal -- doesn't provide us with return value feedback,
   * only exits if there's a serious mismatch between header and library.
   */
    LIBXML_TEST_VERSION;

    /* Test that the library is greater than our minimum version */
    if ((xml_major_version > major) ||
        ((xml_major_version == major) && (xml_minor_version > minor)) ||
        ((xml_major_version == major) && (xml_minor_version == minor) &&
        (xml_micro_version >= micro)))
      {
        return 0;
       }
     else
      {
        printf("\n*** An old version of libxml2 (%d.%d.%d) was found.\n",
               xml_major_version, xml_minor_version, xml_micro_version);
        printf("*** You need a version of libxml2 newer than %d.%d.%d.\n",
               major, minor, micro);
        printf("*** The latest version of libxml2 is always available\n");
        printf("*** from ftp://ftp.xmlsoft.org.\n");
        printf("***\n");
        printf("*** If you've already installed a sufficiently new version,\n");
        printf("*** this error probably means that the wrong copy of the\n");
        printf("*** xml2-config shell script is being found.  The easiest\n");
        printf("*** way to fix this is to remove the old version of\n");
        printf("*** libxml2, but you can also set the environment variable\n");
        printf("*** XML2_CONFIG to the path of the correct copy of\n");
        printf("*** xml2-config.  (In this case, you will have to modify\n");
        printf("*** your LD_LIBRARY_PATH or DYLD_LIBRARY_PATH environment\n");
        printf("*** variable, or edit /etc/ld.so.conf so that the correct\n");
        printf("*** copy of the library is found at run-time.\n");
    }
  return 1;
}

_ACEOF
rm -f conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
  { (case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_try") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
  :
else
  echo "$as_me: program exited with status $ac_status" >&5
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

( exit $ac_status )
no_xml=yes
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
fi


      CPPFLAGS="$ac_save_CPPFLAGS"
      LIBS="$ac_save_LIBS"
    fi

    if test "x$no_xml" = x ; then
      { echo "$as_me:$LINENO: result: yes (version $xml_config_major_version.$xml_config_minor_version.$xml_config_micro_version)" >&5
echo "${ECHO_T}yes (version $xml_config_major_version.$xml_config_minor_version.$xml_config_micro_version)" >&6; }
      :
    else
      if test "$XML2_CONFIG" = "no" ; then
        echo "*** The xml2-config script installed by LIBXML could not be found"
        echo "*** If libxml was installed in PREFIX, make sure PREFIX/bin is in"
        echo "*** your path, or set the XML2_CONFIG environment variable to the"
        echo "*** full path to xml2-config."
      else
        if test -f conf.xmltest ; then
          { { echo "$as_me:$LINENO: error: installed version of libxml2 is too old!" >&5
echo "$as_me: error: installed version of libxml2 is too old!" >&2;}
   { (exit 1); exit 1; }; }
        else
          echo "*** Could not run libxml test program, checking why..."
          CPPFLAGS="$CPPFLAGS $LIBXML_CPPFLAGS"
          LIBS="$LIBS $LIBXML_LIBS"
          cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

#include <libxml/xmlversion.h>
#include <stdio.h>

int
main ()
{
 LIBXML_TEST_VERSION; return 0;
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
   echo "*** The test program compiled, but did not run.  This usually"
          echo "*** means that the run-time linker is not finding libxml2.  You"
          echo "*** will need to set your LD_LIBRARY_PATH or DYLD_LIBRARY_PATH"
          echo "*** environment variable, or edit /etc/ld.so.conf to point to"
          echo "*** the installed location.  Also, make sure you have run"
          echo "*** ldconfig if that is required on your operating system."
          echo "***"
          echo "*** If you have an old version of libxml2 installed, it is best"
          echo "*** to remove it, although you may also be able to get things"
          echo "*** to work by modifying you value of LD_LIBRARY_PATH."
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	 echo "*** The test program failed to compile or link. See the file"
          echo "*** config.log for the exact error that occured. This"
          echo "*** usually means LIBXML was incorrectly installed or that"
          echo "*** you have moved LIBXML since it was installed. In the"
          echo "*** latter case, you may want to edit the xml2-config"
          echo "*** script located in $XML2_CONFIG"
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext

        fi
      fi

      LIBXML_CPPFLAGS=""
      LIBXML_LIBS=""
      :
    fi

    CPPFLAGS="$ac_save_CPPFLAGS"
    LIBS="$ac_save_LIBS"
    case $host in
    *darwin*)
      DYLD_LIBRARY_PATH=$tmp_library_path
      export DYLD_LIBRARY_PATH
      ;;
    *)
      LD_LIBRARY_PATH=$tmp_library_path
      export LD_LIBRARY_PATH
      ;;
    esac


cat >>confdefs.h <<\_ACEOF
#define USE_LIBXML 1
_ACEOF

    USE_LIBXML=1





    rm -f conf.xmltest


    if test "$HOST_TYPE" = "darwin"\
         -a `echo $XML2_CONFIG | sed 's,///*,/,g'` = "/usr/bin/xml2-config"\
         -a "`$XML2_CONFIG --libtool-libs`" = "/usr/lib/libxml2.la"\
         -a $xml_config_major_version -eq 2\
         -a $xml_config_minor_version -eq 6\
         -a $xml_config_micro_version -eq 16; then
      BUGGY_APPLE_LIBXML=1

    fi
  elif test "$with_expat" = "no" -a "$with_xerces" = "no"; then
    { { echo "$as_me:$LINENO: error: No XML parser was chosen. One of the underlying XML Parsers
                 (Expat, Xerces, or libXML) is required to build libSBML.
                  Please rerun the configure script with --with-expat (Expat),
                  --with-xerces (Xerces) , or --with-libxml (LibXML) option.
                  By default, --with-libxml is enabled." >&5
echo "$as_me: error: No XML parser was chosen. One of the underlying XML Parsers
                 (Expat, Xerces, or libXML) is required to build libSBML.
                  Please rerun the configure script with --with-expat (Expat),
                  --with-xerces (Xerces) , or --with-libxml (LibXML) option.
                  By default, --with-libxml is enabled." >&2;}
   { (exit 1); exit 1; }; }
  fi





# Check whether --with-check was given.
if test "${with_check+set}" = set; then
  withval=$with_check; with_libcheck=$withval
else
  with_libcheck=no
fi


  if test $with_libcheck != no; then

    ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu


    LIBCHECK_LIBS="-lcheck"

    if test $with_libcheck != yes; then
      libcheck_root="$with_libcheck"
      libcheck_lib_path=$libcheck_root/lib

  RUN_LDPATH="$RUN_LDPATH:$libcheck_lib_path"

      LIBCHECK_CPPFLAGS="-I$libcheck_root/include"
      LIBCHECK_LDFLAGS="-L$libcheck_lib_path"
    else


      case $host in
      *darwin*)
        if test -e "/sw"; then
          libcheck_root="/sw"
          libcheck_lib_path="/sw/lib"

  RUN_LDPATH="$RUN_LDPATH:$libcheck_lib_path"

          LIBCHECK_CPPFLAGS="-I$libcheck_root/include"
          LIBCHECK_LDFLAGS="-L$libcheck_lib_path"
        fi
        ;;
      esac

                fi


    tmp_CFLAGS="$CFLAGS"
    tmp_LDFLAGS="$LDFLAGS"
    tmp_LIBS="$LIBS"
    CFLAGS="$LIBCHECK_CPPFLAGS $CFLAGS"
    LDFLAGS="$LIBCHECK_LDFLAGS $LDFLAGS"
    LIBS="$LIBCHECK_LIBS $LIBS"

    libcheck_found=no


for ac_header in check.h
do
as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  { echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }
else
  # Is the header compilable?
{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
#include <$ac_header>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_header_compiler=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_header_compiler=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
echo "${ECHO_T}$ac_header_compiler" >&6; }

# Is the header present?
{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <$ac_header>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  ac_header_preproc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  ac_header_preproc=no
fi

rm -f conftest.err conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
echo "${ECHO_T}$ac_header_preproc" >&6; }

# So?  What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
  yes:no: )
    { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
    ac_header_preproc=yes
    ;;
  no:yes:* )
    { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     check for missing prerequisite headers?" >&5
echo "$as_me: WARNING: $ac_header:     check for missing prerequisite headers?" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&5
echo "$as_me: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
    ( cat <<\_ASBOX
## --------------------------------------- ##
## Report this to libsbml-team@caltech.edu ##
## --------------------------------------- ##
_ASBOX
     ) | sed "s/^/$as_me: WARNING:     /" >&2
    ;;
esac
{ echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  eval "$as_ac_Header=\$ac_header_preproc"
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }

fi
if test `eval echo '${'$as_ac_Header'}'` = yes; then
  cat >>confdefs.h <<_ACEOF
#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF
 libcheck_found=yes
else
  libcheck_found=no
fi

done


    if test $libcheck_found = no; then
      { echo "$as_me:$LINENO: checking for srunner_create in -lcheck" >&5
echo $ECHO_N "checking for srunner_create in -lcheck... $ECHO_C" >&6; }
if test "${ac_cv_lib_check_srunner_create+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_check_lib_save_LIBS=$LIBS
LIBS="-lcheck  $LIBS"
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply.  */
#ifdef __cplusplus
extern "C"
#endif
char srunner_create ();
int
main ()
{
return srunner_create ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
  ac_cv_lib_check_srunner_create=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_lib_check_srunner_create=no
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
{ echo "$as_me:$LINENO: result: $ac_cv_lib_check_srunner_create" >&5
echo "${ECHO_T}$ac_cv_lib_check_srunner_create" >&6; }
if test $ac_cv_lib_check_srunner_create = yes; then
  libcheck_found=yes
else
  libcheck_found=no
fi

    fi

    if test $libcheck_found = no; then
      { { echo "$as_me:$LINENO: error: Could not find the libcheck library." >&5
echo "$as_me: error: Could not find the libcheck library." >&2;}
   { (exit 1); exit 1; }; }
    fi

    # Set up LD_LIBRARY_PATH/DYLD_LIBRARY_PATH for compiling the
    # test program below

    tmp_library_path=""
    case $host in
    *darwin*)
      tmp_library_path="$DYLD_LIBRARY_PATH"
      DYLD_LIBRARY_PATH="$DYLD_LIBRARY_PATH;$libcheck_lib_path"
      export DYLD_LIBRARY_PATH
      ;;
    *)
      tmp_library_path="$LD_LIBRARY_PATH"
      LD_LIBRARY_PATH="$LD_LIBRARY_PATH;$libcheck_lib_path"
      export LD_LIBRARY_PATH
      ;;
    esac

    min_check_version=0.9.2
    { echo "$as_me:$LINENO: checking for Check version >= $min_check_version" >&5
echo $ECHO_N "checking for Check version >= $min_check_version... $ECHO_C" >&6; }

    rm -f conf.check-test
    if test "$cross_compiling" = yes; then
  { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
See \`config.log' for more details." >&5
echo "$as_me: error: cannot run test program while cross compiling
See \`config.log' for more details." >&2;}
   { (exit 1); exit 1; }; }
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <check.h>

int main ()
{
  int major, minor, micro;
  char *tmp_version;

  system ("touch conf.check-test");

  /* HP/UX 9 writes to sscanf strings */
  tmp_version = strdup("$min_check_version");
  if (sscanf(tmp_version, "%d.%d.%d", &major, &minor, &micro) != 3)
    {
      printf("%s, bad version string\n", "$min_check_version");
      return 1;
    }

  if ((CHECK_MAJOR_VERSION != check_major_version) ||
      (CHECK_MINOR_VERSION != check_minor_version) ||
      (CHECK_MICRO_VERSION != check_micro_version))
    {
      printf("\n*** The Check header file (version %d.%d.%d) does not match\n",
             CHECK_MAJOR_VERSION, CHECK_MINOR_VERSION, CHECK_MICRO_VERSION);
      printf("*** the Check library found (version %d.%d.%d).\n",
             check_major_version, check_minor_version, check_micro_version);
      return 1;
    }

  if ((check_major_version > major) ||
      ((check_major_version == major) && (check_minor_version > minor)) ||
      ((check_major_version == major) && (check_minor_version == minor)
        && (check_micro_version >= micro)))
    {
      return 0;
    }
  else
    {
      printf("\n*** An old version of Check (%d.%d.%d) was found.\n",
             check_major_version, check_minor_version, check_micro_version);
      printf("*** You need a version of Check that's at least %d.%d.%d.\n",
        major, minor, micro);
      printf("***\n");
      printf("*** If you've already installed a sufficiently new version,\n");
      printf("*** this error probably means that the wrong copy of the\n");
      printf("*** Check library and header file are being found.  Re-run\n");
      printf("*** configure with the --with-check=PATH option to specify\n");
      printf("*** the prefix where the correct version is installed.\n");
    }

  return 1;
}

_ACEOF
rm -f conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
  { (case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_try") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
  { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
else
  echo "$as_me: program exited with status $ac_status" >&5
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

( exit $ac_status )
no_check=yes
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
fi



    CFLAGS="$tmp_CFLAGS"
    LDFLAGS="$tmp_LDFLAGS"
    LIBS="$tmp_LIBS"

    if test "x$no_check" = x ; then
      :
    else
      if test -f conf.check-test ; then
	:
      else
        echo "*** Could not run Check test program, trying to find out why..."

        CFLAGS="$LIBCHECK_CPPFLAGS $CFLAGS"
        LDFLAGS="$LIBCHECK_LDFLAGS $LDFLAGS"
        LIBS="$LIBCHECK_LIBS $LIBS"

        cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

#include <stdio.h>
#include <stdlib.h>
#include <check.h>

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
   echo "*** The test program compiled, but did not run.  This usually"
          echo "*** means that the run-time linker is not finding libcheck.  You"
          echo "*** will need to set your LD_LIBRARY_PATH environment variable,"
          echo "*** or edit /etc/ld.so.conf to point to the installed location."
          echo "*** Also, make sure you have run ldconfig if that is required"
          echo "*** on your operating system."
          echo "***"
          echo "*** If you have an old version of Check installed, it is best"
          echo "*** to remove it, although you may also be able to get things"
          echo "*** to work by modifying you value of LD_LIBRARY_PATH."
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	 echo "*** The test program failed to compile or link. See the file"
          echo "*** 'config.log' for more information about what happened."
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext

        CFLAGS="$tmp_CFLAGS"
        LDFLAGS="$tmp_LDFLAGS"
        LIBS="$tmp_LIBS"

      fi

      rm -f conf.check-test
      { { echo "$as_me:$LINENO: error: check not found" >&5
echo "$as_me: error: check not found" >&2;}
   { (exit 1); exit 1; }; }
    fi

    rm -f conf.check-test

    CFLAGS="$tmp_CFLAGS"
    LDFLAGS="$tmp_LDFLAGS"
    LIBS="$tmp_LIBS"
    case $host in
    *darwin*)
      DYLD_LIBRARY_PATH=$tmp_library_path
      export DYLD_LIBRARY_PATH
      ;;
    *)
      LD_LIBRARY_PATH=$tmp_library_path
      export LD_LIBRARY_PATH
      ;;
    esac

    ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu



cat >>confdefs.h <<\_ACEOF
#define USE_LIBCHECK 1
_ACEOF

    USE_LIBCHECK=1






  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_LIBCHECK"





# Check whether --with-zlib was given.
if test "${with_zlib+set}" = set; then
  withval=$with_zlib; with_zlib="$withval"
else
  with_zlib=autodetect

fi


  if test "x$with_zlib" = "xautodetect"; then
    if test "x$enable_compression" = "xno"; then
      with_zlib=no
    fi
  fi

  { echo "$as_me:$LINENO: checking for zlib library" >&5
echo $ECHO_N "checking for zlib library... $ECHO_C" >&6; }
  if test "x$with_zlib" != "xno"; then
    { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
    if test "x$with_zlib" != "xyes" -a "x$with_zlib" != "xautodetect"; then
      if test -d "$with_zlib/lib"; then
        ZLIB_LDFLAGS="-L${with_zlib}/lib"
      else
        ZLIB_LDFLAGS="-L${with_zlib}"
      fi
    fi

    if test -d "$with_zlib/include"; then
      ZLIB_CPPFLAGS="-I${with_zlib}/include"
    fi

    ZLIB_LIBS="-lz"

    saved_CPPFLAGS=$CPPFLAGS
    saved_LDFLAGS=$LDFLAGS
    saved_LIBS=$LIBS


{ echo "$as_me:$LINENO: checking for deflate in -lz" >&5
echo $ECHO_N "checking for deflate in -lz... $ECHO_C" >&6; }
if test "${ac_cv_lib_z_deflate+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_check_lib_save_LIBS=$LIBS
LIBS="-lz  $LIBS"
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply.  */
#ifdef __cplusplus
extern "C"
#endif
char deflate ();
int
main ()
{
return deflate ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
  ac_cv_lib_z_deflate=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_lib_z_deflate=no
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
{ echo "$as_me:$LINENO: result: $ac_cv_lib_z_deflate" >&5
echo "${ECHO_T}$ac_cv_lib_z_deflate" >&6; }
if test $ac_cv_lib_z_deflate = yes; then
  cat >>confdefs.h <<_ACEOF
#define HAVE_LIBZ 1
_ACEOF

  LIBS="-lz $LIBS"

else

  		  		LDFLAGS="-L/usr/lib -L/usr/local/lib ${LDFLAGS} ${ZLIB_LDFLAGS}"
  		CPPFLAGS="-I/usr/include -I/usr/local/include ${CPPFLAGS} ${ZLIB_CPPFLAGS}"
                  LIBS="${LIBS} ${ZLIB_LIBS}"
  		cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply.  */
#ifdef __cplusplus
extern "C"
#endif
char deflate ();
int
main ()
{
return deflate ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then

                    libz_detected=yes
                    cat >>confdefs.h <<\_ACEOF
#define HAVE_LIBZ 1
_ACEOF


else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5


                   libz_detected=no
                   if test "x$with_zlib" != "xautodetect"; then
                    { { echo "$as_me:$LINENO: error: *** zlib missing - please install zlib first or check config.log.
                  *** Please run the configure command with \"--with-zlib=no\" option if you
                  *** want to build libSBML without support for gzip/zip compressed SBML file." >&5
echo "$as_me: error: *** zlib missing - please install zlib first or check config.log.
                  *** Please run the configure command with \"--with-zlib=no\" option if you
                  *** want to build libSBML without support for gzip/zip compressed SBML file." >&2;}
   { (exit 1); exit 1; }; }
                   else
                     { echo "$as_me:$LINENO: WARNING: *** zlib missing." >&5
echo "$as_me: WARNING: *** zlib missing." >&2;}
                   fi


fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext


fi


    if test "${ac_cv_header_zlib_h+set}" = set; then
  { echo "$as_me:$LINENO: checking for zlib.h" >&5
echo $ECHO_N "checking for zlib.h... $ECHO_C" >&6; }
if test "${ac_cv_header_zlib_h+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
fi
{ echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
echo "${ECHO_T}$ac_cv_header_zlib_h" >&6; }
else
  # Is the header compilable?
{ echo "$as_me:$LINENO: checking zlib.h usability" >&5
echo $ECHO_N "checking zlib.h usability... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
#include <zlib.h>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_header_compiler=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_header_compiler=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
echo "${ECHO_T}$ac_header_compiler" >&6; }

# Is the header present?
{ echo "$as_me:$LINENO: checking zlib.h presence" >&5
echo $ECHO_N "checking zlib.h presence... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <zlib.h>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  ac_header_preproc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  ac_header_preproc=no
fi

rm -f conftest.err conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
echo "${ECHO_T}$ac_header_preproc" >&6; }

# So?  What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
  yes:no: )
    { echo "$as_me:$LINENO: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&5
echo "$as_me: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
    { echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the compiler's result" >&5
echo "$as_me: WARNING: zlib.h: proceeding with the compiler's result" >&2;}
    ac_header_preproc=yes
    ;;
  no:yes:* )
    { echo "$as_me:$LINENO: WARNING: zlib.h: present but cannot be compiled" >&5
echo "$as_me: WARNING: zlib.h: present but cannot be compiled" >&2;}
    { echo "$as_me:$LINENO: WARNING: zlib.h:     check for missing prerequisite headers?" >&5
echo "$as_me: WARNING: zlib.h:     check for missing prerequisite headers?" >&2;}
    { echo "$as_me:$LINENO: WARNING: zlib.h: see the Autoconf documentation" >&5
echo "$as_me: WARNING: zlib.h: see the Autoconf documentation" >&2;}
    { echo "$as_me:$LINENO: WARNING: zlib.h:     section \"Present But Cannot Be Compiled\"" >&5
echo "$as_me: WARNING: zlib.h:     section \"Present But Cannot Be Compiled\"" >&2;}
    { echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the preprocessor's result" >&5
echo "$as_me: WARNING: zlib.h: proceeding with the preprocessor's result" >&2;}
    { echo "$as_me:$LINENO: WARNING: zlib.h: in the future, the compiler will take precedence" >&5
echo "$as_me: WARNING: zlib.h: in the future, the compiler will take precedence" >&2;}
    ( cat <<\_ASBOX
## --------------------------------------- ##
## Report this to libsbml-team@caltech.edu ##
## --------------------------------------- ##
_ASBOX
     ) | sed "s/^/$as_me: WARNING:     /" >&2
    ;;
esac
{ echo "$as_me:$LINENO: checking for zlib.h" >&5
echo $ECHO_N "checking for zlib.h... $ECHO_C" >&6; }
if test "${ac_cv_header_zlib_h+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_cv_header_zlib_h=$ac_header_preproc
fi
{ echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
echo "${ECHO_T}$ac_cv_header_zlib_h" >&6; }

fi
if test $ac_cv_header_zlib_h = yes; then
  zlib_h_detected=yes
else

                      zlib_h_detected="no"
                      if test "x$with_zlib" != "xautodetect"; then
                        { { echo "$as_me:$LINENO: error: *** zlib.h missing - please install zlib first or check config.log.
                  *** Please run the configure command with \"--with-zlib=no\" option if you
                  *** want to build libSBML without support for gzip/zip compressed SBML file." >&5
echo "$as_me: error: *** zlib.h missing - please install zlib first or check config.log.
                  *** Please run the configure command with \"--with-zlib=no\" option if you
                  *** want to build libSBML without support for gzip/zip compressed SBML file." >&2;}
   { (exit 1); exit 1; }; }
                      else
                        { echo "$as_me:$LINENO: WARNING: *** zlib.h missing." >&5
echo "$as_me: WARNING: *** zlib.h missing." >&2;}
                      fi


fi




# Check whether --with-zlib-version-check was given.
if test "${with_zlib_version_check+set}" = set; then
  withval=$with_zlib_version_check;   if test "x$withval" = "xno"; then
  		zlib_check_nonfatal=1
  	     fi


fi


    { echo "$as_me:$LINENO: checking for possibly buggy zlib" >&5
echo $ECHO_N "checking for possibly buggy zlib... $ECHO_C" >&6; }
    if test "$cross_compiling" = yes; then
  	{ echo "$as_me:$LINENO: WARNING: cross compiling: not checking zlib version" >&5
echo "$as_me: WARNING: cross compiling: not checking zlib version" >&2;}

else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

      #include <stdio.h>
      #include <stdlib.h>
      #include <zlib.h>
      int main()
      {

      int a=0, b=0, c=0, d=0, n, v;
  	n = sscanf(ZLIB_VERSION, "%d.%d.%d.%d", &a, &b, &c, &d);
  	if (n != 3 && n != 4)
  		exit(1);
  	v = a*1000000 + b*10000 + c*100 + d;
  	fprintf(stderr, "found zlib version %s (%d)\n", ZLIB_VERSION, v);

  	/* 1.1.4 is OK */
  	if (a == 1 && b == 1 && c >= 4)
  		exit(0);

  	/* 1.2.3 and up are OK */
  	if (v >= 1020300)
  		exit(0);

  	exit(2);
      }

_ACEOF
rm -f conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
  { (case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_try") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
  { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
else
  echo "$as_me: program exited with status $ac_status" >&5
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

( exit $ac_status )
 { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }
        if test -z "$zlib_check_nonfatal"; then
          if test "x$with_zlib" != "xautodetect"; then
  	    { { echo "$as_me:$LINENO: error: *** zlib too old - check config.log ***
Your reported zlib version has known security problems.  It's possible your
vendor has fixed these problems without changing the version number.  If you
are sure this is the case, you can disable the check by running
\"./configure --without-zlib-version-check\".
If you are in doubt, upgrade zlib to version 1.2.3 or greater.
See http://www.gzip.org/zlib/ for details." >&5
echo "$as_me: error: *** zlib too old - check config.log ***
Your reported zlib version has known security problems.  It's possible your
vendor has fixed these problems without changing the version number.  If you
are sure this is the case, you can disable the check by running
\"./configure --without-zlib-version-check\".
If you are in doubt, upgrade zlib to version 1.2.3 or greater.
See http://www.gzip.org/zlib/ for details." >&2;}
   { (exit 1); exit 1; }; }
          fi
        else
          { echo "$as_me:$LINENO: WARNING: zlib version may have security problems" >&5
echo "$as_me: WARNING: zlib version may have security problems" >&2;}
        fi

fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
fi




    CPPFLAGS=$saved_CPPFLAGS
    LDFLAGS=$saved_LDFLAGS
    LIBS=$saved_LIBS

    if test "x$libz_detected" != "xno" -a "x$zlib_h_detected" != "xno"; then

cat >>confdefs.h <<\_ACEOF
#define USE_ZLIB 1
_ACEOF

      USE_ZLIB=1






      LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_ZLIB"
    else
      { echo "$as_me:$LINENO: WARNING: zlib was not found by autodetection." >&5
echo "$as_me: WARNING: zlib was not found by autodetection." >&2;}
      with_zlib=no
      ZLIB_LIBS=""
    fi
  else
    { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
  fi



# Check whether --with-bzip2 was given.
if test "${with_bzip2+set}" = set; then
  withval=$with_bzip2; with_bzip2="$withval"
else
  with_bzip2=autodetect

fi


  if test "x$with_bzip2" = "xautodetect"; then
    if test "x$enable_compression" = "xno"; then
      with_bzip2=no
    fi
  fi

  { echo "$as_me:$LINENO: checking for bzip2 library" >&5
echo $ECHO_N "checking for bzip2 library... $ECHO_C" >&6; }
  if test "x$with_bzip2" != "xno" ; then
    { echo "$as_me:$LINENO: result: yes" >&5
echo "${ECHO_T}yes" >&6; }

    if test "x$with_bzip2" != "xyes" -a "x$with_bzip2" != "xautodetect"; then
      if test -d "$with_bzip2/lib"; then
        BZ2_LDFLAGS="-L${with_bzip2}/lib"
      else
        BZ2_LDFLAGS="-L${with_bzip2}"
      fi
    fi

    if test -d "$with_bzip2/include"; then
      BZ2_CPPFLAGS="-I${with_bzip2}/include"
    fi

    BZ2_LIBS="-lbz2"

    saved_CPPFLAGS=$CPPFLAGS
    saved_LDFLAGS=$LDFLAGS
    saved_LIBS=$LIBS


{ echo "$as_me:$LINENO: checking for BZ2_bzopen in -lbz2" >&5
echo $ECHO_N "checking for BZ2_bzopen in -lbz2... $ECHO_C" >&6; }
if test "${ac_cv_lib_bz2_BZ2_bzopen+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_check_lib_save_LIBS=$LIBS
LIBS="-lbz2  $LIBS"
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply.  */
#ifdef __cplusplus
extern "C"
#endif
char BZ2_bzopen ();
int
main ()
{
return BZ2_bzopen ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then
  ac_cv_lib_bz2_BZ2_bzopen=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_lib_bz2_BZ2_bzopen=no
fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
{ echo "$as_me:$LINENO: result: $ac_cv_lib_bz2_BZ2_bzopen" >&5
echo "${ECHO_T}$ac_cv_lib_bz2_BZ2_bzopen" >&6; }
if test $ac_cv_lib_bz2_BZ2_bzopen = yes; then
  cat >>confdefs.h <<_ACEOF
#define HAVE_LIBBZ2 1
_ACEOF

  LIBS="-lbz2 $LIBS"

else

  		  		LDFLAGS="-L/usr/lib -L/usr/local/lib ${LDFLAGS} ${BZ2_LDFLAGS}"
  		CPPFLAGS="-I/usr/include -I/usr/local/include ${CPPFLAGS} ${BZ2_CPPFLAGS}"
                  LIBS="${LIBS} ${BZ2_LIBS}"
  		cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply.  */
#ifdef __cplusplus
extern "C"
#endif
char BZ2_bzopen ();
int
main ()
{
return BZ2_bzopen ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest$ac_exeext &&
       $as_test_x conftest$ac_exeext; then

                    libbz2_detected=yes
                    cat >>confdefs.h <<\_ACEOF
#define HAVE_BZ2 1
_ACEOF


else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5


                    libbz2_detected=no
                    if test "x$with_bzip2" != "xautodetect"; then
                      { { echo "$as_me:$LINENO: error: *** bzip2 missing - please install bzip2 first or check config.log.
                    *** Please run the configure command with \"--with-bzip2=no\" option if you
                    *** want to build libSBML without support for bzip2 compressed SBML file." >&5
echo "$as_me: error: *** bzip2 missing - please install bzip2 first or check config.log.
                    *** Please run the configure command with \"--with-bzip2=no\" option if you
                    *** want to build libSBML without support for bzip2 compressed SBML file." >&2;}
   { (exit 1); exit 1; }; }
                    else
                     { echo "$as_me:$LINENO: WARNING: *** bzip2 missing." >&5
echo "$as_me: WARNING: *** bzip2 missing." >&2;}
                    fi


fi

rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
      conftest$ac_exeext conftest.$ac_ext


fi


    if test "${ac_cv_header_bzlib_h+set}" = set; then
  { echo "$as_me:$LINENO: checking for bzlib.h" >&5
echo $ECHO_N "checking for bzlib.h... $ECHO_C" >&6; }
if test "${ac_cv_header_bzlib_h+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
fi
{ echo "$as_me:$LINENO: result: $ac_cv_header_bzlib_h" >&5
echo "${ECHO_T}$ac_cv_header_bzlib_h" >&6; }
else
  # Is the header compilable?
{ echo "$as_me:$LINENO: checking bzlib.h usability" >&5
echo $ECHO_N "checking bzlib.h usability... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
#include <bzlib.h>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_header_compiler=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_header_compiler=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
echo "${ECHO_T}$ac_header_compiler" >&6; }

# Is the header present?
{ echo "$as_me:$LINENO: checking bzlib.h presence" >&5
echo $ECHO_N "checking bzlib.h presence... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <bzlib.h>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  ac_header_preproc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  ac_header_preproc=no
fi

rm -f conftest.err conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
echo "${ECHO_T}$ac_header_preproc" >&6; }

# So?  What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
  yes:no: )
    { echo "$as_me:$LINENO: WARNING: bzlib.h: accepted by the compiler, rejected by the preprocessor!" >&5
echo "$as_me: WARNING: bzlib.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
    { echo "$as_me:$LINENO: WARNING: bzlib.h: proceeding with the compiler's result" >&5
echo "$as_me: WARNING: bzlib.h: proceeding with the compiler's result" >&2;}
    ac_header_preproc=yes
    ;;
  no:yes:* )
    { echo "$as_me:$LINENO: WARNING: bzlib.h: present but cannot be compiled" >&5
echo "$as_me: WARNING: bzlib.h: present but cannot be compiled" >&2;}
    { echo "$as_me:$LINENO: WARNING: bzlib.h:     check for missing prerequisite headers?" >&5
echo "$as_me: WARNING: bzlib.h:     check for missing prerequisite headers?" >&2;}
    { echo "$as_me:$LINENO: WARNING: bzlib.h: see the Autoconf documentation" >&5
echo "$as_me: WARNING: bzlib.h: see the Autoconf documentation" >&2;}
    { echo "$as_me:$LINENO: WARNING: bzlib.h:     section \"Present But Cannot Be Compiled\"" >&5
echo "$as_me: WARNING: bzlib.h:     section \"Present But Cannot Be Compiled\"" >&2;}
    { echo "$as_me:$LINENO: WARNING: bzlib.h: proceeding with the preprocessor's result" >&5
echo "$as_me: WARNING: bzlib.h: proceeding with the preprocessor's result" >&2;}
    { echo "$as_me:$LINENO: WARNING: bzlib.h: in the future, the compiler will take precedence" >&5
echo "$as_me: WARNING: bzlib.h: in the future, the compiler will take precedence" >&2;}
    ( cat <<\_ASBOX
## --------------------------------------- ##
## Report this to libsbml-team@caltech.edu ##
## --------------------------------------- ##
_ASBOX
     ) | sed "s/^/$as_me: WARNING:     /" >&2
    ;;
esac
{ echo "$as_me:$LINENO: checking for bzlib.h" >&5
echo $ECHO_N "checking for bzlib.h... $ECHO_C" >&6; }
if test "${ac_cv_header_bzlib_h+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  ac_cv_header_bzlib_h=$ac_header_preproc
fi
{ echo "$as_me:$LINENO: result: $ac_cv_header_bzlib_h" >&5
echo "${ECHO_T}$ac_cv_header_bzlib_h" >&6; }

fi
if test $ac_cv_header_bzlib_h = yes; then
  bzlib_h_detected=yes
else

                      bzlib_h_detected="no"
                      if test "x$with_bzip2" != "xautodetect"; then
                        { { echo "$as_me:$LINENO: error: *** bzlib.h missing - please install bzip2 first or check config.log.
                  *** Please run the configure command with \"--with-bzip2=no\" option if you
                  *** want to build libSBML without support for bzip2 compressed SBML file." >&5
echo "$as_me: error: *** bzlib.h missing - please install bzip2 first or check config.log.
                  *** Please run the configure command with \"--with-bzip2=no\" option if you
                  *** want to build libSBML without support for bzip2 compressed SBML file." >&2;}
   { (exit 1); exit 1; }; }
                      else
                        { echo "$as_me:$LINENO: WARNING: *** bzlib.h missing." >&5
echo "$as_me: WARNING: *** bzlib.h missing." >&2;}
                      fi


fi



    CPPFLAGS=$saved_CPPFLAGS
    LDFLAGS=$saved_LDFLAGS
    LIBS=$saved_LIBS

    if test "x$libbz2_detected" != "xno" -a "x$bzlib_h_detected" != "xno"; then

cat >>confdefs.h <<\_ACEOF
#define USE_BZ2 1
_ACEOF

      USE_BZ2=1






      LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_BZ2"
    else
      { echo "$as_me:$LINENO: WARNING: bzip2 was not found by autodetection." >&5
echo "$as_me: WARNING: bzip2 was not found by autodetection." >&2;}
      with_bzip2=no
      BZ2_LIBS=""
    fi
  else
    { echo "$as_me:$LINENO: result: no" >&5
echo "${ECHO_T}no" >&6; }
  fi




  # Check whether --enable-universal-binary was given.
if test "${enable_universal_binary+set}" = set; then
  enableval=$enable_universal_binary; enable_univbinary=$enableval
else
  enable_univbinary=no
fi


  if test "x$enable_univbinary" != xno; then


    case $host in
    *darwin*)
        ;;
    *)
        { { echo "$as_me:$LINENO: error: *** --enable-universal-binary can be used only on MacOSX. ***" >&5
echo "$as_me: error: *** --enable-universal-binary can be used only on MacOSX. ***" >&2;}
   { (exit 1); exit 1; }; }
	;;
    esac


    if test "x$enable_univbinary" != xyes;
    then
      LDFLAGS="${LDFLAGS} $enable_univbinary"
      CFLAGS="${CFLAGS} $enable_univbinary"
      CXXFLAGS="${CXXFLAGS} $enable_univbinary"
    else
      default_OPTS="-arch i386 -arch ppc"
      LDFLAGS="${LDFLAGS} ${default_OPTS}"
      CFLAGS="${CFLAGS} ${default_OPTS}"
      CXXFLAGS="${CXXFLAGS} ${default_OPTS}"
    fi


cat >>confdefs.h <<\_ACEOF
#define USE_UNIVBINARY 1
_ACEOF

    USE_UNIVBINARY=1

  fi


  LIBSBML_OPTIONS="$LIBSBML_OPTIONS USE_UNIVBINARY"





{ echo "$as_me:$LINENO: checking for ANSI C header files" >&5
echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6; }
if test "${ac_cv_header_stdc+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <stdlib.h>
#include <stdarg.h>
#include <string.h>
#include <float.h>

int
main ()
{

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_header_stdc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_header_stdc=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

if test $ac_cv_header_stdc = yes; then
  # SunOS 4.x string.h does not declare mem*, contrary to ANSI.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <string.h>

_ACEOF
if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
  $EGREP "memchr" >/dev/null 2>&1; then
  :
else
  ac_cv_header_stdc=no
fi
rm -f conftest*

fi

if test $ac_cv_header_stdc = yes; then
  # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI.
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <stdlib.h>

_ACEOF
if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
  $EGREP "free" >/dev/null 2>&1; then
  :
else
  ac_cv_header_stdc=no
fi
rm -f conftest*

fi

if test $ac_cv_header_stdc = yes; then
  # /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi.
  if test "$cross_compiling" = yes; then
  :
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <ctype.h>
#include <stdlib.h>
#if ((' ' & 0x0FF) == 0x020)
# define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
# define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
#else
# define ISLOWER(c) \
		   (('a' <= (c) && (c) <= 'i') \
		     || ('j' <= (c) && (c) <= 'r') \
		     || ('s' <= (c) && (c) <= 'z'))
# define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
#endif

#define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
int
main ()
{
  int i;
  for (i = 0; i < 256; i++)
    if (XOR (islower (i), ISLOWER (i))
	|| toupper (i) != TOUPPER (i))
      return 2;
  return 0;
}
_ACEOF
rm -f conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
  { (case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_try") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
  :
else
  echo "$as_me: program exited with status $ac_status" >&5
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

( exit $ac_status )
ac_cv_header_stdc=no
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
fi


fi
fi
{ echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
echo "${ECHO_T}$ac_cv_header_stdc" >&6; }
if test $ac_cv_header_stdc = yes; then

cat >>confdefs.h <<\_ACEOF
#define STDC_HEADERS 1
_ACEOF

fi


for ac_header in errno.h
do
as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  { echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }
else
  # Is the header compilable?
{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
#include <$ac_header>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_header_compiler=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_header_compiler=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
echo "${ECHO_T}$ac_header_compiler" >&6; }

# Is the header present?
{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <$ac_header>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  ac_header_preproc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  ac_header_preproc=no
fi

rm -f conftest.err conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
echo "${ECHO_T}$ac_header_preproc" >&6; }

# So?  What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
  yes:no: )
    { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
    ac_header_preproc=yes
    ;;
  no:yes:* )
    { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     check for missing prerequisite headers?" >&5
echo "$as_me: WARNING: $ac_header:     check for missing prerequisite headers?" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&5
echo "$as_me: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
    ( cat <<\_ASBOX
## --------------------------------------- ##
## Report this to libsbml-team@caltech.edu ##
## --------------------------------------- ##
_ASBOX
     ) | sed "s/^/$as_me: WARNING:     /" >&2
    ;;
esac
{ echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  eval "$as_ac_Header=\$ac_header_preproc"
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }

fi
if test `eval echo '${'$as_ac_Header'}'` = yes; then
  cat >>confdefs.h <<_ACEOF
#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF

fi

done


for ac_header in math.h
do
as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  { echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }
else
  # Is the header compilable?
{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
#include <$ac_header>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_header_compiler=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_header_compiler=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
echo "${ECHO_T}$ac_header_compiler" >&6; }

# Is the header present?
{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <$ac_header>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  ac_header_preproc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  ac_header_preproc=no
fi

rm -f conftest.err conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
echo "${ECHO_T}$ac_header_preproc" >&6; }

# So?  What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
  yes:no: )
    { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
    ac_header_preproc=yes
    ;;
  no:yes:* )
    { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     check for missing prerequisite headers?" >&5
echo "$as_me: WARNING: $ac_header:     check for missing prerequisite headers?" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&5
echo "$as_me: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
    ( cat <<\_ASBOX
## --------------------------------------- ##
## Report this to libsbml-team@caltech.edu ##
## --------------------------------------- ##
_ASBOX
     ) | sed "s/^/$as_me: WARNING:     /" >&2
    ;;
esac
{ echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  eval "$as_ac_Header=\$ac_header_preproc"
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }

fi
if test `eval echo '${'$as_ac_Header'}'` = yes; then
  cat >>confdefs.h <<_ACEOF
#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF

fi

done


for ac_header in ieeefp.h
do
as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  { echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }
else
  # Is the header compilable?
{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
#include <$ac_header>
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_header_compiler=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_header_compiler=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
echo "${ECHO_T}$ac_header_compiler" >&6; }

# Is the header present?
{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <$ac_header>
_ACEOF
if { (ac_try="$ac_cpp conftest.$ac_ext"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } >/dev/null && {
	 test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
	 test ! -s conftest.err
       }; then
  ac_header_preproc=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

  ac_header_preproc=no
fi

rm -f conftest.err conftest.$ac_ext
{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
echo "${ECHO_T}$ac_header_preproc" >&6; }

# So?  What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
  yes:no: )
    { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
    ac_header_preproc=yes
    ;;
  no:yes:* )
    { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     check for missing prerequisite headers?" >&5
echo "$as_me: WARNING: $ac_header:     check for missing prerequisite headers?" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&5
echo "$as_me: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
    { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
    ( cat <<\_ASBOX
## --------------------------------------- ##
## Report this to libsbml-team@caltech.edu ##
## --------------------------------------- ##
_ASBOX
     ) | sed "s/^/$as_me: WARNING:     /" >&2
    ;;
esac
{ echo "$as_me:$LINENO: checking for $ac_header" >&5
echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  eval "$as_ac_Header=\$ac_header_preproc"
fi
ac_res=`eval echo '${'$as_ac_Header'}'`
	       { echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }

fi
if test `eval echo '${'$as_ac_Header'}'` = yes; then
  cat >>confdefs.h <<_ACEOF
#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF

fi

done




{ echo "$as_me:$LINENO: checking whether byte ordering is bigendian" >&5
echo $ECHO_N "checking whether byte ordering is bigendian... $ECHO_C" >&6; }
if test "${ac_cv_c_bigendian+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  # See if sys/param.h defines the BYTE_ORDER macro.
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <sys/types.h>
#include <sys/param.h>

int
main ()
{
#if  ! (defined BYTE_ORDER && defined BIG_ENDIAN && defined LITTLE_ENDIAN \
	&& BYTE_ORDER && BIG_ENDIAN && LITTLE_ENDIAN)
 bogus endian macros
#endif

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  # It does; now see whether it defined to BIG_ENDIAN or not.
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
#include <sys/types.h>
#include <sys/param.h>

int
main ()
{
#if BYTE_ORDER != BIG_ENDIAN
 not big endian
#endif

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_c_bigendian=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_c_bigendian=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	# It does not; compile a test program.
if test "$cross_compiling" = yes; then
  # try to guess the endianness by grepping values into an object file
  ac_cv_c_bigendian=unknown
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
short int ascii_mm[] = { 0x4249, 0x4765, 0x6E44, 0x6961, 0x6E53, 0x7953, 0 };
short int ascii_ii[] = { 0x694C, 0x5454, 0x656C, 0x6E45, 0x6944, 0x6E61, 0 };
void _ascii () { char *s = (char *) ascii_mm; s = (char *) ascii_ii; }
short int ebcdic_ii[] = { 0x89D3, 0xE3E3, 0x8593, 0x95C5, 0x89C4, 0x9581, 0 };
short int ebcdic_mm[] = { 0xC2C9, 0xC785, 0x95C4, 0x8981, 0x95E2, 0xA8E2, 0 };
void _ebcdic () { char *s = (char *) ebcdic_mm; s = (char *) ebcdic_ii; }
int
main ()
{
 _ascii (); _ebcdic ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  if grep BIGenDianSyS conftest.$ac_objext >/dev/null ; then
  ac_cv_c_bigendian=yes
fi
if grep LiTTleEnDian conftest.$ac_objext >/dev/null ; then
  if test "$ac_cv_c_bigendian" = unknown; then
    ac_cv_c_bigendian=no
  else
    # finding both strings is unlikely to happen, but who knows?
    ac_cv_c_bigendian=unknown
  fi
fi
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5


fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
int
main ()
{

  /* Are we little or big endian?  From Harbison&Steele.  */
  union
  {
    long int l;
    char c[sizeof (long int)];
  } u;
  u.l = 1;
  return u.c[sizeof (long int) - 1] == 1;

  ;
  return 0;
}
_ACEOF
rm -f conftest$ac_exeext
if { (ac_try="$ac_link"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_link") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
  { (case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_try") 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
  ac_cv_c_bigendian=no
else
  echo "$as_me: program exited with status $ac_status" >&5
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

( exit $ac_status )
ac_cv_c_bigendian=yes
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
fi


fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
{ echo "$as_me:$LINENO: result: $ac_cv_c_bigendian" >&5
echo "${ECHO_T}$ac_cv_c_bigendian" >&6; }
case $ac_cv_c_bigendian in
  yes)

cat >>confdefs.h <<\_ACEOF
#define WORDS_BIGENDIAN 1
_ACEOF
 ;;
  no)
     ;;
  *)
    { { echo "$as_me:$LINENO: error: unknown endianness
presetting ac_cv_c_bigendian=no (or yes) will help" >&5
echo "$as_me: error: unknown endianness
presetting ac_cv_c_bigendian=no (or yes) will help" >&2;}
   { (exit 1); exit 1; }; } ;;
esac

{ echo "$as_me:$LINENO: checking for an ANSI C-conforming const" >&5
echo $ECHO_N "checking for an ANSI C-conforming const... $ECHO_C" >&6; }
if test "${ac_cv_c_const+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

int
main ()
{
/* FIXME: Include the comments suggested by Paul. */
#ifndef __cplusplus
  /* Ultrix mips cc rejects this.  */
  typedef int charset[2];
  const charset cs;
  /* SunOS 4.1.1 cc rejects this.  */
  char const *const *pcpcc;
  char **ppc;
  /* NEC SVR4.0.2 mips cc rejects this.  */
  struct point {int x, y;};
  static struct point const zero = {0,0};
  /* AIX XL C 1.02.0.0 rejects this.
     It does not let you subtract one const X* pointer from another in
     an arm of an if-expression whose if-part is not a constant
     expression */
  const char *g = "string";
  pcpcc = &g + (g ? g-g : 0);
  /* HPUX 7.0 cc rejects these. */
  ++pcpcc;
  ppc = (char**) pcpcc;
  pcpcc = (char const *const *) ppc;
  { /* SCO 3.2v4 cc rejects this.  */
    char *t;
    char const *s = 0 ? (char *) 0 : (char const *) 0;

    *t++ = 0;
    if (s) return 0;
  }
  { /* Someone thinks the Sun supposedly-ANSI compiler will reject this.  */
    int x[] = {25, 17};
    const int *foo = &x[0];
    ++foo;
  }
  { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */
    typedef const int *iptr;
    iptr p = 0;
    ++p;
  }
  { /* AIX XL C 1.02.0.0 rejects this saying
       "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */
    struct s { int j; const int *ap[3]; };
    struct s *b; b->j = 5;
  }
  { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */
    const int foo = 10;
    if (!foo) return 0;
  }
  return !cs[0] && !zero.x;
#endif

  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_c_const=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_c_const=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
{ echo "$as_me:$LINENO: result: $ac_cv_c_const" >&5
echo "${ECHO_T}$ac_cv_c_const" >&6; }
if test $ac_cv_c_const = no; then

cat >>confdefs.h <<\_ACEOF
#define const
_ACEOF

fi

{ echo "$as_me:$LINENO: checking for size_t" >&5
echo $ECHO_N "checking for size_t... $ECHO_C" >&6; }
if test "${ac_cv_type_size_t+set}" = set; then
  echo $ECHO_N "(cached) $ECHO_C" >&6
else
  cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */
$ac_includes_default
typedef size_t ac__type_new_;
int
main ()
{
if ((ac__type_new_ *) 0)
  return 0;
if (sizeof (ac__type_new_))
  return 0;
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext
if { (ac_try="$ac_compile"
case "(($ac_try" in
  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
  *) ac_try_echo=$ac_try;;
esac
eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
  (eval "$ac_compile") 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } && {
	 test -z "$ac_c_werror_flag" ||
	 test ! -s conftest.err
       } && test -s conftest.$ac_objext; then
  ac_cv_type_size_t=yes
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

	ac_cv_type_size_t=no
fi

rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
{ echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
echo "${ECHO_T}$ac_cv_type_size_t" >&6; }
if test $ac_cv_type_size_t = yes; then
  :
else

cat >>confdefs.h <<_ACEOF
#define size_t unsigned int
_ACEOF

fi






# Root directory
# Translate path for native Windows compilers for use with 'make check'

ROOT_DIR=`pwd`
case $host in
*-*-cygwin* | *-*-mingw*)
  if (cygpath --mixed $ROOT_DIR) >/dev/null 2>/dev/null; then
    ROOT_DIR=`cygpath --mixed $ROOT_DIR`
  fi
  # Extra files generated by some Windows compilers
  EXTRA_CLEAN="*.stackdump *.exp *.lib"
  ;;
esac


cat >>confdefs.h <<\_ACEOF
#define LIBSBML_OPTIONS 1
_ACEOF





ac_config_files="$ac_config_files config/makefile-common-vars.mk"

ac_config_files="$ac_config_files ./Makefile"


ac_config_files="$ac_config_files src/Makefile"


ac_config_files="$ac_config_files src/common/Makefile"

ac_config_files="$ac_config_files src/common/libsbml-version.h"


ac_config_files="$ac_config_files src/bindings/Makefile"


ac_config_files="$ac_config_files src/bindings/python/Makefile"

ac_config_files="$ac_config_files src/bindings/python/setup.py"


ac_config_files="$ac_config_files src/bindings/perl/Makefile"

ac_config_files="$ac_config_files src/bindings/perl/Makefile.PL"


ac_config_files="$ac_config_files src/bindings/matlab/Makefile"

ac_config_files="$ac_config_files src/bindings/matlab/test/Makefile"


ac_config_files="$ac_config_files src/bindings/octave/Makefile"

ac_config_files="$ac_config_files src/bindings/octave/test/Makefile"


ac_config_files="$ac_config_files src/bindings/java/Makefile"


# The Lisp language binding has been removed for the time being, because it
# no longer works in recent versions of libSBML.
# AC_CONFIG_FILES([src/bindings/java/Makefile])

ac_config_files="$ac_config_files src/bindings/ruby/Makefile"


ac_config_files="$ac_config_files src/bindings/csharp/Makefile"


ac_config_files="$ac_config_files src/annotation/Makefile"

ac_config_files="$ac_config_files src/annotation/test/Makefile"


ac_config_files="$ac_config_files src/math/Makefile"

ac_config_files="$ac_config_files src/math/test/Makefile"


ac_config_files="$ac_config_files src/units/Makefile"

ac_config_files="$ac_config_files src/units/test/Makefile"


ac_config_files="$ac_config_files src/sbml/Makefile"

ac_config_files="$ac_config_files src/sbml/test/Makefile"


ac_config_files="$ac_config_files src/sbml/layout/Makefile"

ac_config_files="$ac_config_files src/sbml/layout/test/Makefile"


ac_config_files="$ac_config_files src/util/Makefile"

ac_config_files="$ac_config_files src/util/test/Makefile"


ac_config_files="$ac_config_files src/validator/Makefile"

ac_config_files="$ac_config_files src/validator/constraints/Makefile"

ac_config_files="$ac_config_files src/validator/test/Makefile"


ac_config_files="$ac_config_files src/xml/Makefile"

ac_config_files="$ac_config_files src/xml/test/Makefile"


ac_config_files="$ac_config_files src/compress/Makefile"


ac_config_files="$ac_config_files docs/Makefile"

ac_config_files="$ac_config_files docs/src/doxygen-config-c.txt"

ac_config_files="$ac_config_files docs/src/doxygen-config-cpp.txt"

ac_config_files="$ac_config_files docs/src/doxygen-config-python.txt"

ac_config_files="$ac_config_files docs/src/doxygen-config-perl.txt"

ac_config_files="$ac_config_files docs/src/Makefile"


ac_config_files="$ac_config_files win32/Makefile"

ac_config_files="$ac_config_files win32/MSVC7/Makefile"

ac_config_files="$ac_config_files win32/MSVC8/Makefile"


ac_config_files="$ac_config_files examples/c/Makefile"

ac_config_files="$ac_config_files examples/c++/Makefile"

ac_config_files="$ac_config_files examples/java/Makefile"

ac_config_files="$ac_config_files examples/csharp/Makefile"


if test "$enable_layout" != "no" ; then
  ac_config_files="$ac_config_files examples/layout/Makefile"

fi

cat >confcache <<\_ACEOF
# This file is a shell script that caches the results of configure
# tests run on this system so they can be shared between configure
# scripts and configure runs, see configure's option --config-cache.
# It is not useful on other systems.  If it contains results you don't
# want to keep, you may remove or edit it.
#
# config.status only pays attention to the cache file if you give it
# the --recheck option to rerun configure.
#
# `ac_cv_env_foo' variables (set or unset) will be overridden when
# loading this file, other *unset* `ac_cv_foo' will be assigned the
# following values.

_ACEOF

# The following way of writing the cache mishandles newlines in values,
# but we know of no workaround that is simple, portable, and efficient.
# So, we kill variables containing newlines.
# Ultrix sh set writes to stderr and can't be redirected directly,
# and sets the high bit in the cache file unless we assign to the vars.
(
  for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
    eval ac_val=\$$ac_var
    case $ac_val in #(
    *${as_nl}*)
      case $ac_var in #(
      *_cv_*) { echo "$as_me:$LINENO: WARNING: Cache variable $ac_var contains a newline." >&5
echo "$as_me: WARNING: Cache variable $ac_var contains a newline." >&2;} ;;
      esac
      case $ac_var in #(
      _ | IFS | as_nl) ;; #(
      *) $as_unset $ac_var ;;
      esac ;;
    esac
  done

  (set) 2>&1 |
    case $as_nl`(ac_space=' '; set) 2>&1` in #(
    *${as_nl}ac_space=\ *)
      # `set' does not quote correctly, so add quotes (double-quote
      # substitution turns \\\\ into \\, and sed turns \\ into \).
      sed -n \
	"s/'/'\\\\''/g;
	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
      ;; #(
    *)
      # `set' quotes correctly as required by POSIX, so do not add quotes.
      sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
      ;;
    esac |
    sort
) |
  sed '
     /^ac_cv_env_/b end
     t clear
     :clear
     s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
     t end
     s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
     :end' >>confcache
if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
  if test -w "$cache_file"; then
    test "x$cache_file" != "x/dev/null" &&
      { echo "$as_me:$LINENO: updating cache $cache_file" >&5
echo "$as_me: updating cache $cache_file" >&6;}
    cat confcache >$cache_file
  else
    { echo "$as_me:$LINENO: not updating unwritable cache $cache_file" >&5
echo "$as_me: not updating unwritable cache $cache_file" >&6;}
  fi
fi
rm -f confcache

test "x$prefix" = xNONE && prefix=$ac_default_prefix
# Let make expand exec_prefix.
test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'

DEFS=-DHAVE_CONFIG_H

ac_libobjs=
ac_ltlibobjs=
for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
  # 1. Remove the extension, and $U if already installed.
  ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
  ac_i=`echo "$ac_i" | sed "$ac_script"`
  # 2. Prepend LIBOBJDIR.  When used with automake>=1.10 LIBOBJDIR
  #    will be set to the directory where LIBOBJS objects are built.
  ac_libobjs="$ac_libobjs \${LIBOBJDIR}$ac_i\$U.$ac_objext"
  ac_ltlibobjs="$ac_ltlibobjs \${LIBOBJDIR}$ac_i"'$U.lo'
done
LIBOBJS=$ac_libobjs

LTLIBOBJS=$ac_ltlibobjs



: ${CONFIG_STATUS=./config.status}
ac_clean_files_save=$ac_clean_files
ac_clean_files="$ac_clean_files $CONFIG_STATUS"
{ echo "$as_me:$LINENO: creating $CONFIG_STATUS" >&5
echo "$as_me: creating $CONFIG_STATUS" >&6;}
cat >$CONFIG_STATUS <<_ACEOF
#! $SHELL
# Generated by $as_me.
# Run this file to recreate the current configuration.
# Compiler output produced by configure, useful for debugging
# configure, is in config.log if it exists.

debug=false
ac_cs_recheck=false
ac_cs_silent=false
SHELL=\${CONFIG_SHELL-$SHELL}
_ACEOF

cat >>$CONFIG_STATUS <<\_ACEOF
## --------------------- ##
## M4sh Initialization.  ##
## --------------------- ##

# Be more Bourne compatible
DUALCASE=1; export DUALCASE # for MKS sh
if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
  emulate sh
  NULLCMD=:
  # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
  # is contrary to our usage.  Disable this feature.
  alias -g '${1+"$@"}'='"$@"'
  setopt NO_GLOB_SUBST
else
  case `(set -o) 2>/dev/null` in
  *posix*) set -o posix ;;
esac

fi




# PATH needs CR
# Avoid depending upon Character Ranges.
as_cr_letters='abcdefghijklmnopqrstuvwxyz'
as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
as_cr_Letters=$as_cr_letters$as_cr_LETTERS
as_cr_digits='0123456789'
as_cr_alnum=$as_cr_Letters$as_cr_digits

# The user is always right.
if test "${PATH_SEPARATOR+set}" != set; then
  echo "#! /bin/sh" >conf$$.sh
  echo  "exit 0"   >>conf$$.sh
  chmod +x conf$$.sh
  if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
    PATH_SEPARATOR=';'
  else
    PATH_SEPARATOR=:
  fi
  rm -f conf$$.sh
fi

# Support unset when possible.
if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
  as_unset=unset
else
  as_unset=false
fi


# IFS
# We need space, tab and new line, in precisely that order.  Quoting is
# there to prevent editors from complaining about space-tab.
# (If _AS_PATH_WALK were called with IFS unset, it would disable word
# splitting by setting IFS to empty value.)
as_nl='
'
IFS=" ""	$as_nl"

# Find who we are.  Look in the path if we contain no directory separator.
case $0 in
  *[\\/]* ) as_myself=$0 ;;
  *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
  IFS=$as_save_IFS
  test -z "$as_dir" && as_dir=.
  test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
done
IFS=$as_save_IFS

     ;;
esac
# We did not find ourselves, most probably we were run as `sh COMMAND'
# in which case we are not to be found in the path.
if test "x$as_myself" = x; then
  as_myself=$0
fi
if test ! -f "$as_myself"; then
  echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
  { (exit 1); exit 1; }
fi

# Work around bugs in pre-3.0 UWIN ksh.
for as_var in ENV MAIL MAILPATH
do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
done
PS1='$ '
PS2='> '
PS4='+ '

# NLS nuisances.
for as_var in \
  LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
  LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
  LC_TELEPHONE LC_TIME
do
  if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
    eval $as_var=C; export $as_var
  else
    ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
  fi
done

# Required to use basename.
if expr a : '\(a\)' >/dev/null 2>&1 &&
   test "X`expr 00001 : '.*\(...\)'`" = X001; then
  as_expr=expr
else
  as_expr=false
fi

if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
  as_basename=basename
else
  as_basename=false
fi


# Name of the executable.
as_me=`$as_basename -- "$0" ||
$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
	 X"$0" : 'X\(//\)$' \| \
	 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
echo X/"$0" |
    sed '/^.*\/\([^/][^/]*\)\/*$/{
	    s//\1/
	    q
	  }
	  /^X\/\(\/\/\)$/{
	    s//\1/
	    q
	  }
	  /^X\/\(\/\).*/{
	    s//\1/
	    q
	  }
	  s/.*/./; q'`

# CDPATH.
$as_unset CDPATH



  as_lineno_1=$LINENO
  as_lineno_2=$LINENO
  test "x$as_lineno_1" != "x$as_lineno_2" &&
  test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {

  # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
  # uniformly replaced by the line number.  The first 'sed' inserts a
  # line-number line after each line using $LINENO; the second 'sed'
  # does the real work.  The second script uses 'N' to pair each
  # line-number line with the line containing $LINENO, and appends
  # trailing '-' during substitution so that $LINENO is not a special
  # case at line end.
  # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
  # scripts with optimization help from Paolo Bonzini.  Blame Lee
  # E. McMahon (1931-1989) for sed's syntax.  :-)
  sed -n '
    p
    /[$]LINENO/=
  ' <$as_myself |
    sed '
      s/[$]LINENO.*/&-/
      t lineno
      b
      :lineno
      N
      :loop
      s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
      t loop
      s/-\n.*//
    ' >$as_me.lineno &&
  chmod +x "$as_me.lineno" ||
    { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
   { (exit 1); exit 1; }; }

  # Don't try to exec as it changes $[0], causing all sort of problems
  # (the dirname of $[0] is not the place where we might find the
  # original and so on.  Autoconf is especially sensitive to this).
  . "./$as_me.lineno"
  # Exit status is that of the last command.
  exit
}


if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
  as_dirname=dirname
else
  as_dirname=false
fi

ECHO_C= ECHO_N= ECHO_T=
case `echo -n x` in
-n*)
  case `echo 'x\c'` in
  *c*) ECHO_T='	';;	# ECHO_T is single tab character.
  *)   ECHO_C='\c';;
  esac;;
*)
  ECHO_N='-n';;
esac

if expr a : '\(a\)' >/dev/null 2>&1 &&
   test "X`expr 00001 : '.*\(...\)'`" = X001; then
  as_expr=expr
else
  as_expr=false
fi

rm -f conf$$ conf$$.exe conf$$.file
if test -d conf$$.dir; then
  rm -f conf$$.dir/conf$$.file
else
  rm -f conf$$.dir
  mkdir conf$$.dir
fi
echo >conf$$.file
if ln -s conf$$.file conf$$ 2>/dev/null; then
  as_ln_s='ln -s'
  # ... but there are two gotchas:
  # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
  # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
  # In both cases, we have to default to `cp -p'.
  ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
    as_ln_s='cp -p'
elif ln conf$$.file conf$$ 2>/dev/null; then
  as_ln_s=ln
else
  as_ln_s='cp -p'
fi
rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
rmdir conf$$.dir 2>/dev/null

if mkdir -p . 2>/dev/null; then
  as_mkdir_p=:
else
  test -d ./-p && rmdir ./-p
  as_mkdir_p=false
fi

if test -x / >/dev/null 2>&1; then
  as_test_x='test -x'
else
  if ls -dL / >/dev/null 2>&1; then
    as_ls_L_option=L
  else
    as_ls_L_option=
  fi
  as_test_x='
    eval sh -c '\''
      if test -d "$1"; then
        test -d "$1/.";
      else
	case $1 in
        -*)set "./$1";;
	esac;
	case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
	???[sx]*):;;*)false;;esac;fi
    '\'' sh
  '
fi
as_executable_p=$as_test_x

# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"

# Sed expression to map a string onto a valid variable name.
as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"


exec 6>&1

# Save the log message, to keep $[0] and so on meaningful, and to
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by libSBML $as_me 3.3.2, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  CONFIG_FILES    = $CONFIG_FILES
  CONFIG_HEADERS  = $CONFIG_HEADERS
  CONFIG_LINKS    = $CONFIG_LINKS
  CONFIG_COMMANDS = $CONFIG_COMMANDS
  $ $0 $@

on `(hostname || uname -n) 2>/dev/null | sed 1q`
"

_ACEOF

cat >>$CONFIG_STATUS <<_ACEOF
# Files that config.status was made for.
config_files="$ac_config_files"
config_headers="$ac_config_headers"

_ACEOF

cat >>$CONFIG_STATUS <<\_ACEOF
ac_cs_usage="\
\`$as_me' instantiates files from templates according to the
current configuration.

Usage: $0 [OPTIONS] [FILE]...

  -h, --help       print this help, then exit
  -V, --version    print version number and configuration settings, then exit
  -q, --quiet      do not print progress messages
  -d, --debug      don't remove temporary files
      --recheck    update $as_me by reconfiguring in the same conditions
  --file=FILE[:TEMPLATE]
		   instantiate the configuration file FILE
  --header=FILE[:TEMPLATE]
		   instantiate the configuration header FILE

Configuration files:
$config_files

Configuration headers:
$config_headers

Report bugs to <bug-autoconf@gnu.org>."

_ACEOF
cat >>$CONFIG_STATUS <<_ACEOF
ac_cs_version="\\
libSBML config.status 3.3.2
configured by $0, generated by GNU Autoconf 2.61,
  with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"

Copyright (C) 2006 Free Software Foundation, Inc.
This config.status script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it."

ac_pwd='$ac_pwd'
srcdir='$srcdir'
INSTALL='$INSTALL'
_ACEOF

cat >>$CONFIG_STATUS <<\_ACEOF
# If no file are specified by the user, then we need to provide default
# value.  By we need to know if files were specified by the user.
ac_need_defaults=:
while test $# != 0
do
  case $1 in
  --*=*)
    ac_option=`expr "X$1" : 'X\([^=]*\)='`
    ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
    ac_shift=:
    ;;
  *)
    ac_option=$1
    ac_optarg=$2
    ac_shift=shift
    ;;
  esac

  case $ac_option in
  # Handling of the options.
  -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
    ac_cs_recheck=: ;;
  --version | --versio | --versi | --vers | --ver | --ve | --v | -V )
    echo "$ac_cs_version"; exit ;;
  --debug | --debu | --deb | --de | --d | -d )
    debug=: ;;
  --file | --fil | --fi | --f )
    $ac_shift
    CONFIG_FILES="$CONFIG_FILES $ac_optarg"
    ac_need_defaults=false;;
  --header | --heade | --head | --hea )
    $ac_shift
    CONFIG_HEADERS="$CONFIG_HEADERS $ac_optarg"
    ac_need_defaults=false;;
  --he | --h)
    # Conflict between --help and --header
    { echo "$as_me: error: ambiguous option: $1
Try \`$0 --help' for more information." >&2
   { (exit 1); exit 1; }; };;
  --help | --hel | -h )
    echo "$ac_cs_usage"; exit ;;
  -q | -quiet | --quiet | --quie | --qui | --qu | --q \
  | -silent | --silent | --silen | --sile | --sil | --si | --s)
    ac_cs_silent=: ;;

  # This is an error.
  -*) { echo "$as_me: error: unrecognized option: $1
Try \`$0 --help' for more information." >&2
   { (exit 1); exit 1; }; } ;;

  *) ac_config_targets="$ac_config_targets $1"
     ac_need_defaults=false ;;

  esac
  shift
done

ac_configure_extra_args=

if $ac_cs_silent; then
  exec 6>/dev/null
  ac_configure_extra_args="$ac_configure_extra_args --silent"
fi

_ACEOF
cat >>$CONFIG_STATUS <<_ACEOF
if \$ac_cs_recheck; then
  echo "running CONFIG_SHELL=$SHELL $SHELL $0 "$ac_configure_args \$ac_configure_extra_args " --no-create --no-recursion" >&6
  CONFIG_SHELL=$SHELL
  export CONFIG_SHELL
  exec $SHELL "$0"$ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
fi

_ACEOF
cat >>$CONFIG_STATUS <<\_ACEOF
exec 5>>config.log
{
  echo
  sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
## Running $as_me. ##
_ASBOX
  echo "$ac_log"
} >&5

_ACEOF
cat >>$CONFIG_STATUS <<_ACEOF
_ACEOF

cat >>$CONFIG_STATUS <<\_ACEOF

# Handling of arguments.
for ac_config_target in $ac_config_targets
do
  case $ac_config_target in
    "src/common/libsbml-config-unix.h") CONFIG_HEADERS="$CONFIG_HEADERS src/common/libsbml-config-unix.h" ;;
    "src/common/libsbml-package.h") CONFIG_HEADERS="$CONFIG_HEADERS src/common/libsbml-package.h" ;;
    "config/makefile-common-vars.mk") CONFIG_FILES="$CONFIG_FILES config/makefile-common-vars.mk" ;;
    "./Makefile") CONFIG_FILES="$CONFIG_FILES ./Makefile" ;;
    "src/Makefile") CONFIG_FILES="$CONFIG_FILES src/Makefile" ;;
    "src/common/Makefile") CONFIG_FILES="$CONFIG_FILES src/common/Makefile" ;;
    "src/common/libsbml-version.h") CONFIG_FILES="$CONFIG_FILES src/common/libsbml-version.h" ;;
    "src/bindings/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/Makefile" ;;
    "src/bindings/python/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/python/Makefile" ;;
    "src/bindings/python/setup.py") CONFIG_FILES="$CONFIG_FILES src/bindings/python/setup.py" ;;
    "src/bindings/perl/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/perl/Makefile" ;;
    "src/bindings/perl/Makefile.PL") CONFIG_FILES="$CONFIG_FILES src/bindings/perl/Makefile.PL" ;;
    "src/bindings/matlab/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/matlab/Makefile" ;;
    "src/bindings/matlab/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/matlab/test/Makefile" ;;
    "src/bindings/octave/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/octave/Makefile" ;;
    "src/bindings/octave/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/octave/test/Makefile" ;;
    "src/bindings/java/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/java/Makefile" ;;
    "src/bindings/ruby/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/ruby/Makefile" ;;
    "src/bindings/csharp/Makefile") CONFIG_FILES="$CONFIG_FILES src/bindings/csharp/Makefile" ;;
    "src/annotation/Makefile") CONFIG_FILES="$CONFIG_FILES src/annotation/Makefile" ;;
    "src/annotation/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/annotation/test/Makefile" ;;
    "src/math/Makefile") CONFIG_FILES="$CONFIG_FILES src/math/Makefile" ;;
    "src/math/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/math/test/Makefile" ;;
    "src/units/Makefile") CONFIG_FILES="$CONFIG_FILES src/units/Makefile" ;;
    "src/units/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/units/test/Makefile" ;;
    "src/sbml/Makefile") CONFIG_FILES="$CONFIG_FILES src/sbml/Makefile" ;;
    "src/sbml/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/sbml/test/Makefile" ;;
    "src/sbml/layout/Makefile") CONFIG_FILES="$CONFIG_FILES src/sbml/layout/Makefile" ;;
    "src/sbml/layout/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/sbml/layout/test/Makefile" ;;
    "src/util/Makefile") CONFIG_FILES="$CONFIG_FILES src/util/Makefile" ;;
    "src/util/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/util/test/Makefile" ;;
    "src/validator/Makefile") CONFIG_FILES="$CONFIG_FILES src/validator/Makefile" ;;
    "src/validator/constraints/Makefile") CONFIG_FILES="$CONFIG_FILES src/validator/constraints/Makefile" ;;
    "src/validator/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/validator/test/Makefile" ;;
    "src/xml/Makefile") CONFIG_FILES="$CONFIG_FILES src/xml/Makefile" ;;
    "src/xml/test/Makefile") CONFIG_FILES="$CONFIG_FILES src/xml/test/Makefile" ;;
    "src/compress/Makefile") CONFIG_FILES="$CONFIG_FILES src/compress/Makefile" ;;
    "docs/Makefile") CONFIG_FILES="$CONFIG_FILES docs/Makefile" ;;
    "docs/src/doxygen-config-c.txt") CONFIG_FILES="$CONFIG_FILES docs/src/doxygen-config-c.txt" ;;
    "docs/src/doxygen-config-cpp.txt") CONFIG_FILES="$CONFIG_FILES docs/src/doxygen-config-cpp.txt" ;;
    "docs/src/doxygen-config-python.txt") CONFIG_FILES="$CONFIG_FILES docs/src/doxygen-config-python.txt" ;;
    "docs/src/doxygen-config-perl.txt") CONFIG_FILES="$CONFIG_FILES docs/src/doxygen-config-perl.txt" ;;
    "docs/src/Makefile") CONFIG_FILES="$CONFIG_FILES docs/src/Makefile" ;;
    "win32/Makefile") CONFIG_FILES="$CONFIG_FILES win32/Makefile" ;;
    "win32/MSVC7/Makefile") CONFIG_FILES="$CONFIG_FILES win32/MSVC7/Makefile" ;;
    "win32/MSVC8/Makefile") CONFIG_FILES="$CONFIG_FILES win32/MSVC8/Makefile" ;;
    "examples/c/Makefile") CONFIG_FILES="$CONFIG_FILES examples/c/Makefile" ;;
    "examples/c++/Makefile") CONFIG_FILES="$CONFIG_FILES examples/c++/Makefile" ;;
    "examples/java/Makefile") CONFIG_FILES="$CONFIG_FILES examples/java/Makefile" ;;
    "examples/csharp/Makefile") CONFIG_FILES="$CONFIG_FILES examples/csharp/Makefile" ;;
    "examples/layout/Makefile") CONFIG_FILES="$CONFIG_FILES examples/layout/Makefile" ;;

  *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
   { (exit 1); exit 1; }; };;
  esac
done


# If the user did not use the arguments to specify the items to instantiate,
# then the envvar interface is used.  Set only those that are not.
# We use the long form for the default assignment because of an extremely
# bizarre bug on SunOS 4.1.3.
if $ac_need_defaults; then
  test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
  test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
fi

# Have a temporary directory for convenience.  Make it in the build tree
# simply because there is no reason against having it here, and in addition,
# creating and moving files from /tmp can sometimes cause problems.
# Hook for its removal unless debugging.
# Note that there is a small window in which the directory will not be cleaned:
# after its creation but before its name has been assigned to `$tmp'.
$debug ||
{
  tmp=
  trap 'exit_status=$?
  { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
' 0
  trap '{ (exit 1); exit 1; }' 1 2 13 15
}
# Create a (secure) tmp directory for tmp files.

{
  tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
  test -n "$tmp" && test -d "$tmp"
}  ||
{
  tmp=./conf$$-$RANDOM
  (umask 077 && mkdir "$tmp")
} ||
{
   echo "$me: cannot create a temporary directory in ." >&2
   { (exit 1); exit 1; }
}

#
# Set up the sed scripts for CONFIG_FILES section.
#

# No need to generate the scripts if there are no CONFIG_FILES.
# This happens for instance when ./config.status config.h
if test -n "$CONFIG_FILES"; then

_ACEOF



ac_delim='%!_!# '
for ac_last_try in false false false false false :; do
  cat >conf$$subs.sed <<_ACEOF
SHELL!$SHELL$ac_delim
PATH_SEPARATOR!$PATH_SEPARATOR$ac_delim
PACKAGE_NAME!$PACKAGE_NAME$ac_delim
PACKAGE_TARNAME!$PACKAGE_TARNAME$ac_delim
PACKAGE_VERSION!$PACKAGE_VERSION$ac_delim
PACKAGE_STRING!$PACKAGE_STRING$ac_delim
PACKAGE_BUGREPORT!$PACKAGE_BUGREPORT$ac_delim
exec_prefix!$exec_prefix$ac_delim
prefix!$prefix$ac_delim
program_transform_name!$program_transform_name$ac_delim
bindir!$bindir$ac_delim
sbindir!$sbindir$ac_delim
libexecdir!$libexecdir$ac_delim
datarootdir!$datarootdir$ac_delim
datadir!$datadir$ac_delim
sysconfdir!$sysconfdir$ac_delim
sharedstatedir!$sharedstatedir$ac_delim
localstatedir!$localstatedir$ac_delim
includedir!$includedir$ac_delim
oldincludedir!$oldincludedir$ac_delim
docdir!$docdir$ac_delim
infodir!$infodir$ac_delim
htmldir!$htmldir$ac_delim
dvidir!$dvidir$ac_delim
pdfdir!$pdfdir$ac_delim
psdir!$psdir$ac_delim
libdir!$libdir$ac_delim
localedir!$localedir$ac_delim
mandir!$mandir$ac_delim
DEFS!$DEFS$ac_delim
ECHO_C!$ECHO_C$ac_delim
ECHO_N!$ECHO_N$ac_delim
ECHO_T!$ECHO_T$ac_delim
LIBS!$LIBS$ac_delim
build_alias!$build_alias$ac_delim
host_alias!$host_alias$ac_delim
target_alias!$target_alias$ac_delim
LIBSBML_VERSION_NUMERIC!$LIBSBML_VERSION_NUMERIC$ac_delim
USE_LAYOUT!$USE_LAYOUT$ac_delim
USE_COMPRESSION!$USE_COMPRESSION$ac_delim
build!$build$ac_delim
build_cpu!$build_cpu$ac_delim
build_vendor!$build_vendor$ac_delim
build_os!$build_os$ac_delim
host!$host$ac_delim
host_cpu!$host_cpu$ac_delim
host_vendor!$host_vendor$ac_delim
host_os!$host_os$ac_delim
HOST_TYPE!$HOST_TYPE$ac_delim
SHAREDLIBEXT!$SHAREDLIBEXT$ac_delim
RUN_LDPATH!$RUN_LDPATH$ac_delim
CXX!$CXX$ac_delim
CXXFLAGS!$CXXFLAGS$ac_delim
LDFLAGS!$LDFLAGS$ac_delim
CPPFLAGS!$CPPFLAGS$ac_delim
ac_ct_CXX!$ac_ct_CXX$ac_delim
EXEEXT!$EXEEXT$ac_delim
OBJEXT!$OBJEXT$ac_delim
CC!$CC$ac_delim
CFLAGS!$CFLAGS$ac_delim
ac_ct_CC!$ac_ct_CC$ac_delim
CPP!$CPP$ac_delim
RANLIB!$RANLIB$ac_delim
INSTALL_PROGRAM!$INSTALL_PROGRAM$ac_delim
INSTALL_SCRIPT!$INSTALL_SCRIPT$ac_delim
INSTALL_DATA!$INSTALL_DATA$ac_delim
SET_MAKE!$SET_MAKE$ac_delim
AUTOCONF!$AUTOCONF$ac_delim
ACLOCAL!$ACLOCAL$ac_delim
AR!$AR$ac_delim
SWIG!$SWIG$ac_delim
USE_SWIG!$USE_SWIG$ac_delim
SWIGLIB!$SWIGLIB$ac_delim
SWIGFLAGS!$SWIGFLAGS$ac_delim
SWIG_CPPFLAGS!$SWIG_CPPFLAGS$ac_delim
SWIG_LDFLAGS!$SWIG_LDFLAGS$ac_delim
SWIG_LIBS!$SWIG_LIBS$ac_delim
PYTHON!$PYTHON$ac_delim
USE_PYTHON!$USE_PYTHON$ac_delim
PYTHON_CPPFLAGS!$PYTHON_CPPFLAGS$ac_delim
PYTHON_LDFLAGS!$PYTHON_LDFLAGS$ac_delim
PYTHON_LIBS!$PYTHON_LIBS$ac_delim
PYTHON_EXT!$PYTHON_EXT$ac_delim
PERL!$PERL$ac_delim
USE_PERL!$USE_PERL$ac_delim
PERL_CPPFLAGS!$PERL_CPPFLAGS$ac_delim
PERL_LDFLAGS!$PERL_LDFLAGS$ac_delim
PERL_LIBS!$PERL_LIBS$ac_delim
JAVA!$JAVA$ac_delim
JAVAC!$JAVAC$ac_delim
JAR!$JAR$ac_delim
USE_JAVA!$USE_JAVA$ac_delim
JAVA_CPPFLAGS!$JAVA_CPPFLAGS$ac_delim
JAVA_LDFLAGS!$JAVA_LDFLAGS$ac_delim
JNIEXT!$JNIEXT$ac_delim
JNIBASENAME!$JNIBASENAME$ac_delim
JAVADOC_JAR!$JAVADOC_JAR$ac_delim
_ACEOF

  if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
    break
  elif $ac_last_try; then
    { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
   { (exit 1); exit 1; }; }
  else
    ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
  fi
done

ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
if test -n "$ac_eof"; then
  ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
  ac_eof=`expr $ac_eof + 1`
fi

cat >>$CONFIG_STATUS <<_ACEOF
cat >"\$tmp/subs-1.sed" <<\CEOF$ac_eof
/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
_ACEOF
sed '
s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
s/^/s,@/; s/!/@,|#_!!_#|/
:n
t n
s/'"$ac_delim"'$/,g/; t
s/$/\\/; p
N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
' >>$CONFIG_STATUS <conf$$subs.sed
rm -f conf$$subs.sed
cat >>$CONFIG_STATUS <<_ACEOF
CEOF$ac_eof
_ACEOF


ac_delim='%!_!# '
for ac_last_try in false false false false false :; do
  cat >conf$$subs.sed <<_ACEOF
MEX!$MEX$ac_delim
MATLAB!$MATLAB$ac_delim
USE_MATLAB!$USE_MATLAB$ac_delim
MATLAB_CPPFLAGS!$MATLAB_CPPFLAGS$ac_delim
MATLAB_LDFLAGS!$MATLAB_LDFLAGS$ac_delim
MATLAB_LIBS!$MATLAB_LIBS$ac_delim
MEX_FLAGS!$MEX_FLAGS$ac_delim
MEXEXT!$MEXEXT$ac_delim
OCTAVE!$OCTAVE$ac_delim
MKOCTFILE!$MKOCTFILE$ac_delim
OCTAVE_CONFIG!$OCTAVE_CONFIG$ac_delim
USE_OCTAVE!$USE_OCTAVE$ac_delim
MKOCTFILE_FLAGS!$MKOCTFILE_FLAGS$ac_delim
OCTAVEEXT!$OCTAVEEXT$ac_delim
LOCALOCTFILEDIR!$LOCALOCTFILEDIR$ac_delim
RUBY!$RUBY$ac_delim
USE_RUBY!$USE_RUBY$ac_delim
RUBY_CPPFLAGS!$RUBY_CPPFLAGS$ac_delim
RUBY_LDFLAGS!$RUBY_LDFLAGS$ac_delim
RUBY_LIBS!$RUBY_LIBS$ac_delim
CSHARP_COMPILER!$CSHARP_COMPILER$ac_delim
CSHARP_CILINTERPRETER!$CSHARP_CILINTERPRETER$ac_delim
SN!$SN$ac_delim
GACUTIL!$GACUTIL$ac_delim
USE_CSHARP!$USE_CSHARP$ac_delim
CSHARP_CPPFLAGS!$CSHARP_CPPFLAGS$ac_delim
CSHARP_LDFLAGS!$CSHARP_LDFLAGS$ac_delim
CSHARP_SWIGFLAGS!$CSHARP_SWIGFLAGS$ac_delim
CSHARP_EXT!$CSHARP_EXT$ac_delim
DOXYGEN!$DOXYGEN$ac_delim
USE_DOXYGEN!$USE_DOXYGEN$ac_delim
GREP!$GREP$ac_delim
EGREP!$EGREP$ac_delim
USE_EXPAT!$USE_EXPAT$ac_delim
EXPAT_CPPFLAGS!$EXPAT_CPPFLAGS$ac_delim
EXPAT_LDFLAGS!$EXPAT_LDFLAGS$ac_delim
EXPAT_LIBS!$EXPAT_LIBS$ac_delim
CXXCPP!$CXXCPP$ac_delim
USE_XERCES!$USE_XERCES$ac_delim
XERCES_CPPFLAGS!$XERCES_CPPFLAGS$ac_delim
XERCES_LDFLAGS!$XERCES_LDFLAGS$ac_delim
XERCES_LIBS!$XERCES_LIBS$ac_delim
XML2_CONFIG!$XML2_CONFIG$ac_delim
USE_LIBXML!$USE_LIBXML$ac_delim
LIBXML_CPPFLAGS!$LIBXML_CPPFLAGS$ac_delim
LIBXML_LDFLAGS!$LIBXML_LDFLAGS$ac_delim
LIBXML_LIBS!$LIBXML_LIBS$ac_delim
BUGGY_APPLE_LIBXML!$BUGGY_APPLE_LIBXML$ac_delim
USE_LIBCHECK!$USE_LIBCHECK$ac_delim
LIBCHECK_CPPFLAGS!$LIBCHECK_CPPFLAGS$ac_delim
LIBCHECK_LDFLAGS!$LIBCHECK_LDFLAGS$ac_delim
LIBCHECK_LIBS!$LIBCHECK_LIBS$ac_delim
USE_ZLIB!$USE_ZLIB$ac_delim
ZLIB_CPPFLAGS!$ZLIB_CPPFLAGS$ac_delim
ZLIB_LDFLAGS!$ZLIB_LDFLAGS$ac_delim
ZLIB_LIBS!$ZLIB_LIBS$ac_delim
USE_BZ2!$USE_BZ2$ac_delim
BZ2_CPPFLAGS!$BZ2_CPPFLAGS$ac_delim
BZ2_LDFLAGS!$BZ2_LDFLAGS$ac_delim
BZ2_LIBS!$BZ2_LIBS$ac_delim
UNIVBINARY!$UNIVBINARY$ac_delim
USE_UNIVBINARY!$USE_UNIVBINARY$ac_delim
LIBSBML_OPTIONS!$LIBSBML_OPTIONS$ac_delim
LIBOBJS!$LIBOBJS$ac_delim
LTLIBOBJS!$LTLIBOBJS$ac_delim
_ACEOF

  if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 65; then
    break
  elif $ac_last_try; then
    { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
   { (exit 1); exit 1; }; }
  else
    ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
  fi
done

ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
if test -n "$ac_eof"; then
  ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
  ac_eof=`expr $ac_eof + 1`
fi

cat >>$CONFIG_STATUS <<_ACEOF
cat >"\$tmp/subs-2.sed" <<\CEOF$ac_eof
/@[a-zA-Z_][a-zA-Z_0-9]*@/!b end
_ACEOF
sed '
s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
s/^/s,@/; s/!/@,|#_!!_#|/
:n
t n
s/'"$ac_delim"'$/,g/; t
s/$/\\/; p
N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
' >>$CONFIG_STATUS <conf$$subs.sed
rm -f conf$$subs.sed
cat >>$CONFIG_STATUS <<_ACEOF
:end
s/|#_!!_#|//g
CEOF$ac_eof
_ACEOF


# VPATH may cause trouble with some makes, so we remove $(srcdir),
# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
# trailing colons and then remove the whole line if VPATH becomes empty
# (actually we leave an empty line to preserve line numbers).
if test "x$srcdir" = x.; then
  ac_vpsub='/^[	 ]*VPATH[	 ]*=/{
s/:*\$(srcdir):*/:/
s/:*\${srcdir}:*/:/
s/:*@srcdir@:*/:/
s/^\([^=]*=[	 ]*\):*/\1/
s/:*$//
s/^[^=]*=[	 ]*$//
}'
fi

cat >>$CONFIG_STATUS <<\_ACEOF
fi # test -n "$CONFIG_FILES"


for ac_tag in  :F $CONFIG_FILES  :H $CONFIG_HEADERS
do
  case $ac_tag in
  :[FHLC]) ac_mode=$ac_tag; continue;;
  esac
  case $ac_mode$ac_tag in
  :[FHL]*:*);;
  :L* | :C*:*) { { echo "$as_me:$LINENO: error: Invalid tag $ac_tag." >&5
echo "$as_me: error: Invalid tag $ac_tag." >&2;}
   { (exit 1); exit 1; }; };;
  :[FH]-) ac_tag=-:-;;
  :[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
  esac
  ac_save_IFS=$IFS
  IFS=:
  set x $ac_tag
  IFS=$ac_save_IFS
  shift
  ac_file=$1
  shift

  case $ac_mode in
  :L) ac_source=$1;;
  :[FH])
    ac_file_inputs=
    for ac_f
    do
      case $ac_f in
      -) ac_f="$tmp/stdin";;
      *) # Look for the file first in the build tree, then in the source tree
	 # (if the path is not absolute).  The absolute path cannot be DOS-style,
	 # because $ac_f cannot contain `:'.
	 test -f "$ac_f" ||
	   case $ac_f in
	   [\\/$]*) false;;
	   *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
	   esac ||
	   { { echo "$as_me:$LINENO: error: cannot find input file: $ac_f" >&5
echo "$as_me: error: cannot find input file: $ac_f" >&2;}
   { (exit 1); exit 1; }; };;
      esac
      ac_file_inputs="$ac_file_inputs $ac_f"
    done

    # Let's still pretend it is `configure' which instantiates (i.e., don't
    # use $as_me), people would be surprised to read:
    #    /* config.h.  Generated by config.status.  */
    configure_input="Generated from "`IFS=:
	  echo $* | sed 's|^[^:]*/||;s|:[^:]*/|, |g'`" by configure."
    if test x"$ac_file" != x-; then
      configure_input="$ac_file.  $configure_input"
      { echo "$as_me:$LINENO: creating $ac_file" >&5
echo "$as_me: creating $ac_file" >&6;}
    fi

    case $ac_tag in
    *:-:* | *:-) cat >"$tmp/stdin";;
    esac
    ;;
  esac

  ac_dir=`$as_dirname -- "$ac_file" ||
$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
	 X"$ac_file" : 'X\(//\)[^/]' \| \
	 X"$ac_file" : 'X\(//\)$' \| \
	 X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
echo X"$ac_file" |
    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
	    s//\1/
	    q
	  }
	  /^X\(\/\/\)[^/].*/{
	    s//\1/
	    q
	  }
	  /^X\(\/\/\)$/{
	    s//\1/
	    q
	  }
	  /^X\(\/\).*/{
	    s//\1/
	    q
	  }
	  s/.*/./; q'`
  { as_dir="$ac_dir"
  case $as_dir in #(
  -*) as_dir=./$as_dir;;
  esac
  test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
    as_dirs=
    while :; do
      case $as_dir in #(
      *\'*) as_qdir=`echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #(
      *) as_qdir=$as_dir;;
      esac
      as_dirs="'$as_qdir' $as_dirs"
      as_dir=`$as_dirname -- "$as_dir" ||
$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
	 X"$as_dir" : 'X\(//\)[^/]' \| \
	 X"$as_dir" : 'X\(//\)$' \| \
	 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
echo X"$as_dir" |
    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
	    s//\1/
	    q
	  }
	  /^X\(\/\/\)[^/].*/{
	    s//\1/
	    q
	  }
	  /^X\(\/\/\)$/{
	    s//\1/
	    q
	  }
	  /^X\(\/\).*/{
	    s//\1/
	    q
	  }
	  s/.*/./; q'`
      test -d "$as_dir" && break
    done
    test -z "$as_dirs" || eval "mkdir $as_dirs"
  } || test -d "$as_dir" || { { echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
echo "$as_me: error: cannot create directory $as_dir" >&2;}
   { (exit 1); exit 1; }; }; }
  ac_builddir=.

case "$ac_dir" in
.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
*)
  ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
  # A ".." for each directory in $ac_dir_suffix.
  ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
  case $ac_top_builddir_sub in
  "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
  *)  ac_top_build_prefix=$ac_top_builddir_sub/ ;;
  esac ;;
esac
ac_abs_top_builddir=$ac_pwd
ac_abs_builddir=$ac_pwd$ac_dir_suffix
# for backward compatibility:
ac_top_builddir=$ac_top_build_prefix

case $srcdir in
  .)  # We are building in place.
    ac_srcdir=.
    ac_top_srcdir=$ac_top_builddir_sub
    ac_abs_top_srcdir=$ac_pwd ;;
  [\\/]* | ?:[\\/]* )  # Absolute name.
    ac_srcdir=$srcdir$ac_dir_suffix;
    ac_top_srcdir=$srcdir
    ac_abs_top_srcdir=$srcdir ;;
  *) # Relative name.
    ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
    ac_top_srcdir=$ac_top_build_prefix$srcdir
    ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
esac
ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix


  case $ac_mode in
  :F)
  #
  # CONFIG_FILE
  #

  case $INSTALL in
  [\\/$]* | ?:[\\/]* ) ac_INSTALL=$INSTALL ;;
  *) ac_INSTALL=$ac_top_build_prefix$INSTALL ;;
  esac
_ACEOF

cat >>$CONFIG_STATUS <<\_ACEOF
# If the template does not know about datarootdir, expand it.
# FIXME: This hack should be removed a few years after 2.60.
ac_datarootdir_hack=; ac_datarootdir_seen=

case `sed -n '/datarootdir/ {
  p
  q
}
/@datadir@/p
/@docdir@/p
/@infodir@/p
/@localedir@/p
/@mandir@/p
' $ac_file_inputs` in
*datarootdir*) ac_datarootdir_seen=yes;;
*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
  { echo "$as_me:$LINENO: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
_ACEOF
cat >>$CONFIG_STATUS <<_ACEOF
  ac_datarootdir_hack='
  s&@datadir@&$datadir&g
  s&@docdir@&$docdir&g
  s&@infodir@&$infodir&g
  s&@localedir@&$localedir&g
  s&@mandir@&$mandir&g
    s&\\\${datarootdir}&$datarootdir&g' ;;
esac
_ACEOF

# Neutralize VPATH when `$srcdir' = `.'.
# Shell code in configure.ac might set extrasub.
# FIXME: do we really want to maintain this feature?
cat >>$CONFIG_STATUS <<_ACEOF
  sed "$ac_vpsub
$extrasub
_ACEOF
cat >>$CONFIG_STATUS <<\_ACEOF
:t
/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
s&@configure_input@&$configure_input&;t t
s&@top_builddir@&$ac_top_builddir_sub&;t t
s&@srcdir@&$ac_srcdir&;t t
s&@abs_srcdir@&$ac_abs_srcdir&;t t
s&@top_srcdir@&$ac_top_srcdir&;t t
s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
s&@builddir@&$ac_builddir&;t t
s&@abs_builddir@&$ac_abs_builddir&;t t
s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
s&@INSTALL@&$ac_INSTALL&;t t
$ac_datarootdir_hack
" $ac_file_inputs | sed -f "$tmp/subs-1.sed" | sed -f "$tmp/subs-2.sed" >$tmp/out

test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
  { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
  { ac_out=`sed -n '/^[	 ]*datarootdir[	 ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
  { echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
which seems to be undefined.  Please make sure it is defined." >&5
echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
which seems to be undefined.  Please make sure it is defined." >&2;}

  rm -f "$tmp/stdin"
  case $ac_file in
  -) cat "$tmp/out"; rm -f "$tmp/out";;
  *) rm -f "$ac_file"; mv "$tmp/out" $ac_file;;
  esac
 ;;
  :H)
  #
  # CONFIG_HEADER
  #
_ACEOF

# Transform confdefs.h into a sed script `conftest.defines', that
# substitutes the proper values into config.h.in to produce config.h.
rm -f conftest.defines conftest.tail
# First, append a space to every undef/define line, to ease matching.
echo 's/$/ /' >conftest.defines
# Then, protect against being on the right side of a sed subst, or in
# an unquoted here document, in config.status.  If some macros were
# called several times there might be several #defines for the same
# symbol, which is useless.  But do not sort them, since the last
# AC_DEFINE must be honored.
ac_word_re=[_$as_cr_Letters][_$as_cr_alnum]*
# These sed commands are passed to sed as "A NAME B PARAMS C VALUE D", where
# NAME is the cpp macro being defined, VALUE is the value it is being given.
# PARAMS is the parameter list in the macro definition--in most cases, it's
# just an empty string.
ac_dA='s,^\\([	 #]*\\)[^	 ]*\\([	 ]*'
ac_dB='\\)[	 (].*,\\1define\\2'
ac_dC=' '
ac_dD=' ,'

uniq confdefs.h |
  sed -n '
	t rset
	:rset
	s/^[	 ]*#[	 ]*define[	 ][	 ]*//
	t ok
	d
	:ok
	s/[\\&,]/\\&/g
	s/^\('"$ac_word_re"'\)\(([^()]*)\)[	 ]*\(.*\)/ '"$ac_dA"'\1'"$ac_dB"'\2'"${ac_dC}"'\3'"$ac_dD"'/p
	s/^\('"$ac_word_re"'\)[	 ]*\(.*\)/'"$ac_dA"'\1'"$ac_dB$ac_dC"'\2'"$ac_dD"'/p
  ' >>conftest.defines

# Remove the space that was appended to ease matching.
# Then replace #undef with comments.  This is necessary, for
# example, in the case of _POSIX_SOURCE, which is predefined and required
# on some systems where configure will not decide to define it.
# (The regexp can be short, since the line contains either #define or #undef.)
echo 's/ $//
s,^[	 #]*u.*,/* & */,' >>conftest.defines

# Break up conftest.defines:
ac_max_sed_lines=50

# First sed command is:	 sed -f defines.sed $ac_file_inputs >"$tmp/out1"
# Second one is:	 sed -f defines.sed "$tmp/out1" >"$tmp/out2"
# Third one will be:	 sed -f defines.sed "$tmp/out2" >"$tmp/out1"
# et cetera.
ac_in='$ac_file_inputs'
ac_out='"$tmp/out1"'
ac_nxt='"$tmp/out2"'

while :
do
  # Write a here document:
    cat >>$CONFIG_STATUS <<_ACEOF
    # First, check the format of the line:
    cat >"\$tmp/defines.sed" <<\\CEOF
/^[	 ]*#[	 ]*undef[	 ][	 ]*$ac_word_re[	 ]*\$/b def
/^[	 ]*#[	 ]*define[	 ][	 ]*$ac_word_re[(	 ]/b def
b
:def
_ACEOF
  sed ${ac_max_sed_lines}q conftest.defines >>$CONFIG_STATUS
  echo 'CEOF
    sed -f "$tmp/defines.sed"' "$ac_in >$ac_out" >>$CONFIG_STATUS
  ac_in=$ac_out; ac_out=$ac_nxt; ac_nxt=$ac_in
  sed 1,${ac_max_sed_lines}d conftest.defines >conftest.tail
  grep . conftest.tail >/dev/null || break
  rm -f conftest.defines
  mv conftest.tail conftest.defines
done
rm -f conftest.defines conftest.tail

echo "ac_result=$ac_in" >>$CONFIG_STATUS
cat >>$CONFIG_STATUS <<\_ACEOF
  if test x"$ac_file" != x-; then
    echo "/* $configure_input  */" >"$tmp/config.h"
    cat "$ac_result" >>"$tmp/config.h"
    if diff $ac_file "$tmp/config.h" >/dev/null 2>&1; then
      { echo "$as_me:$LINENO: $ac_file is unchanged" >&5
echo "$as_me: $ac_file is unchanged" >&6;}
    else
      rm -f $ac_file
      mv "$tmp/config.h" $ac_file
    fi
  else
    echo "/* $configure_input  */"
    cat "$ac_result"
  fi
  rm -f "$tmp/out12"
 ;;


  esac

done # for ac_tag


{ (exit 0); exit 0; }
_ACEOF
chmod +x $CONFIG_STATUS
ac_clean_files=$ac_clean_files_save


# configure is writing to config.log, and then calls config.status.
# config.status does its own redirection, appending to config.log.
# Unfortunately, on DOS this fails, as config.log is still kept open
# by configure, so config.status won't be able to write to it; its
# output is simply discarded.  So we exec the FD to /dev/null,
# effectively closing config.log, so it can be properly (re)opened and
# appended to by config.status.  When coming back to configure, we
# need to make the FD available again.
if test "$no_create" != yes; then
  ac_cs_success=:
  ac_config_status_args=
  test "$silent" = yes &&
    ac_config_status_args="$ac_config_status_args --quiet"
  exec 5>/dev/null
  $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false
  exec 5>>config.log
  # Use ||, not &&, to avoid exiting from the if with $? = 1, which
  # would make configure fail if this is the last instruction.
  $ac_cs_success || { (exit 1); exit 1; }
fi





if test $with_expat != no; then
  xml_library="Expat"
  xml_cppflags=$EXPAT_CPPFLAGS
  xml_ldflags=$EXPAT_LDFLAGS
  xml_libs=$EXPAT_LIBS
elif test $with_libxml != no; then
  xml_library="libxml2"
  xml_cppflags=$LIBXML_CPPFLAGS
  xml_ldflags=$LIBXML_LDFLAGS
  xml_libs=$LIBXML_LIBS
else
  xml_library="Xerces-C++"
  xml_cppflags=$XERCES_CPPFLAGS
  xml_ldflags=$XERCES_LDFLAGS
  xml_libs=$XERCES_LIBS
fi



print_whitespace()
{
  i=$1
  if test -n "$i"; then
    while expr $i \> 0 > /dev/null
    do
      i=`expr $i - 1`; printf ' '
    done
  fi
}

print_flag()
{
  if test -n "$2" -a "$2" != "no"; then
    i=`expr 13 - ${#1}`
    printf "  Using $1 with path "
    print_whitespace $i
    if test -n "$4"; then
      /bin/echo -n "= $3"
    else
      echo "= $3"
    fi
  fi
        if test -n "$4"; then
    echo "  ($4)"
  fi
}


echo ""
echo "----------------------------------------------------------------------"
echo "${PACKAGE_NAME} version ${PACKAGE_VERSION}"
echo "----------------------------------------------------------------------"
echo ""
echo "More information and the latest version are available online at"
echo "http://sbml.org/Software/libSBML"
echo ""
echo "Please report problems using the issue tracker at"
echo "http://sbml.org/software/libsbml/issue-tracker"
echo ""
echo "To contact the developers directly, email libsbml-team@caltech.edu"
echo ""
echo "Configured on host \"`hostname`\""
echo "  host type                     = $HOST_TYPE"
echo "  host vendor                   = $host_vendor"
echo "  host operating system         = $host_os"
echo "  host CPU architecture         = $host_cpu"
echo ""
echo "General build flags:"
echo "  CC                            = $CC"
echo "  CXX                           = $CXX"
echo "  CFLAGS                        = $CFLAGS"
echo "  CXXFLAGS                      = $CXXFLAGS"
echo "  CPPFLAGS                      = $CPPFLAGS $ZLIB_CPPFLAGS $BZ2_CPPFLAGS"
echo "  LDFLAGS                       = $LDFLAGS $ZLIB_LDFLAGS $BZ2_LDFLAGS"
echo "  LIBS                          = $LIBS $ZLIB_LIBS $BZ2_LIBS"
echo ""
echo "XML parser library configuration:"
echo "  XML library                   = $xml_library"
echo "  CPPFLAGS for XML              = $xml_cppflags"
echo "  LDFLAGS for XML               = $xml_ldflags"
echo "  LIBS for XML                  = $xml_libs"
echo ""
echo "Other ${PACKAGE_NAME} configuration settings:"
echo "  Installation \$prefix          = $prefix"

print_flag "libcheck"  	$with_libcheck	$with_check
print_flag "SWIG"   	$with_swig	$SWIG
print_flag "doxygen"    $with_doxygen   $with_doxygen
print_flag "Java"   	$with_java	$JAVA
print_flag "Python" 	$with_python	$PYTHON
print_flag "Perl"   	$with_perl	$PERL
print_flag "MATLAB"   	$with_matlab	$MATLAB
print_flag "Octave"   	$with_octave	$OCTAVE
print_flag "Asdf"   	$EXT_ASDF	$ASDF
print_flag "UFFI"   	$EXT_UFFI	$UFFI
print_flag "Ruby"       $with_ruby      $RUBY
print_flag "CSharp"     $with_csharp    $CSHARP_CILINTERPRETER
print_flag "zlib"       $with_zlib      $with_zlib
print_flag "bzip2"      $with_bzip2     $with_bzip2

if test "$enable_layout" != "no" ; then
  echo "  Using layout extension  = yes"
fi

echo ""
echo "Other potentially important settings:"
if test "$enable_univbinary" != "no"; then
  echo "  Building libSBML as MacSO universal binary."
fi

if test "$with_zlib" != no; then
  /bin/echo -n "  Compression support enabled for .zip"
  if test "$with_bzip2" != no; then
    echo ", .gz and .bz2 files"
  else
    echo " and .gz files"
  fi
elif test "$with_bzip2" != no; then
  echo "  Compression support enabled for .bz2 files"
fi

if test "$HOST_TYPE" = "darwin"; then
  echo "  Value of \$DYLD_LIBRARY_PATH   = $DYLD_LIBRARY_PATH"
else
  echo "  Value of \$LD_LIBRARY_PATH     = $LD_LIBRARY_PATH"
fi

if test -n "$with_java" -a "$with_java" != "no"; then
  echo "  Value of \$CLASSPATH for Java  = $CLASSPATH"
fi

if test -n "$with_csharp" -a "$with_csharp" != "no"; then
  echo "  Using CSharp compiler = $CSHARP_COMPILER"
fi


if test "$with_zlib" = no && test "$with_bzip2" = no; then
  echo ""
  echo "Warning: reading/writing compressed SBML in this copy of libSBML"
  echo "is not supported or has not been enabled.  If this was not your"
  echo "intention, please check the --with-zlib, -with-bzip2, and/or"
  echo "--enable-compression options."
  echo ""
elif test "$with_zlib" = no; then
  echo ""
  echo "Warning: reading/writing compressed SBML in .gz and .zip format"
  echo "in this copy of libSBML is not supported or has been disabled."
  echo "If this was not your intention, please check the --with-zlib"
  echo "option."
  echo ""
elif test "$with_bzip2" = no; then
  echo ""
  echo "Warning: reading/writing compressed SBML in .bz2 format in"
  echo "this copy of libSBML is not supported or has been disabled."
  echo "If this was not your intention, please check the --with-bzip2"
  echo "option."
  echo ""
fi



echo "----------------------------------------------------------------------"
echo ""
