Uses of Package
org.biojavax.bio.phylo.io.nexus

Packages that use org.biojavax.bio.phylo.io.nexus

org.biojavax.bio.phylo	Classes to support phlylogeny objects.
org.biojavax.bio.phylo.io.nexus	Classes to support the I/O of Nexus files.

Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo

CharactersBlock
Represents Nexus characters blocks.

TaxaBlock
Represents Nexus taxa blocks.

Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo.io.nexus

CharactersBlock
Represents Nexus characters blocks.

CharactersBlockBuilder
Builds Nexus characters blocks.

CharactersBlockListener
Listens to events that represent Nexus characters blocks.

CharactersBlockParser
Parses Nexus characters blocks.

DataBlockListener
Listens to events that represent Nexus data blocks.

DistancesBlockListener
Listens to events that represent Nexus distances blocks.

NexusBlock
Represents a Nexus block.

NexusBlock.Abstract

NexusBlockBuilder
Builds a Nexus block from listening to events.

NexusBlockBuilder.Abstract
This abstract version knows how to build and add comments.

NexusBlockListener
Listens to events from NexusBlockParser objects to create objects.

NexusBlockParser
Parses Nexus blocks.

NexusBlockParser.Abstract
All block parsers should derive from this abstract parser.

NexusComment
Represents a Nexus comment, possibly nested.

NexusFile
Represents Nexus files.

NexusFileListener
Listens to events fired by the Nexus parser.

NexusFileListener.Abstract
Example abstract implementation which all others should extend.

NexusObject
Represents general info about nexus objects.

TaxaBlockListener
Listens to events that represent Nexus taxa blocks.

TreesBlock.NewickTreeString
A simple representation of a Newick tree as a single string.

TreesBlockListener
Listens to events that represent Nexus trees blocks.