/* Copyright 2005-2006  Alexander V. Diemand

    This file is part of MolTalk.

    MolTalk is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; either version 2 of the License, or
    (at your option) any later version.

    MolTalk is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with MolTalk; if not, write to the Free Software
    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA 
 */
 
/* vim: set filetype=objc: */


#ifndef MTSUBSTITUTIONMATRIX_OH
#define MTSUBSTITUTIONMATRIX_OH


#include <Foundation/Foundation.h>


@interface MTSubstitutionMatrix : NSObject

+(float)exchangeScoreBetween: (char)ch1 and: (char)ch2;

@end

@interface MTSubstitutionMatrixBlosum45 : MTSubstitutionMatrix
@end

@interface MTSubstitutionMatrixBlosum62 : MTSubstitutionMatrix
@end

@interface MTSubstitutionMatrixBlosum80 : MTSubstitutionMatrix
@end


#endif /* MTSUBSTITUTIONMATRIX_OH */

