org.biojavax.bio.phylo
Class DistanceBasedTreeMethod

java.lang.Object
  org.biojavax.bio.phylo.DistanceBasedTreeMethod

public class DistanceBasedTreeMethod
extends Object

Constructor Summary

DistanceBasedTreeMethod()

Method Summary

static org.jgrapht.WeightedGraph<String,org.jgrapht.graph.DefaultWeightedEdge>	NeighborJoining(TaxaBlock t, CharactersBlock ch)
static org.jgrapht.WeightedGraph<String,org.jgrapht.graph.DefaultWeightedEdge>	Upgma(TaxaBlock t, CharactersBlock ch)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DistanceBasedTreeMethod

public DistanceBasedTreeMethod()

Method Detail

Upgma

public static org.jgrapht.WeightedGraph<String,org.jgrapht.graph.DefaultWeightedEdge> Upgma(TaxaBlock t,
                                                                                            CharactersBlock ch)

NeighborJoining

public static org.jgrapht.WeightedGraph<String,org.jgrapht.graph.DefaultWeightedEdge> NeighborJoining(TaxaBlock t,
                                                                                                      CharactersBlock ch)