Uses of Package
org.biojava.bio.structure

Packages that use org.biojava.bio.structure

org.biojava.bio.program.das.dasstructure	request a protein structure via DAS
org.biojava.bio.structure	Interfaces and classes for protein structure (PDB).
org.biojava.bio.structure.align	Classes for the super-imposition of structures.
org.biojava.bio.structure.align.helper	Helper classes for structural alignment.
org.biojava.bio.structure.align.pairwise	Classes for the pairwise alignment of structures.
org.biojava.bio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.bio.structure.gui.events	Some event classes for the protein structure GUIs.
org.biojava.bio.structure.gui.util	Some utility classes for the protein structure GUIs.
org.biojava.bio.structure.io	Input and Output of Structures
org.biojava.bio.structure.io.mmcif	Input and Output of mmcif files
org.biojava.bio.structure.server	classes for easier management of PDB installations

Classes in org.biojava.bio.structure used by org.biojava.bio.program.das.dasstructure

Structure
Interface for a structure object.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure

AminoAcid
A Group that represents an AminoAcid.

Atom
A simple interface for an Atom.

Author
Describes author attributes for author information in a PDB file.

Chain
Defines the interface for a Chain.

Compound
Created by IntelliJ IDEA.

DBRef
A class to represent database cross references.

Group
This is the data structure for a single Group of atoms.

HetatomImpl
Generic Implementation of a Group interface.

JournalArticle
PDB-specific

PDBHeader
A class that contains PDB Header information.

PDBRecord
An interface implemented by all classes that represent PDB records

SSBond
A simple bean to store disulfid bridge information, the SSBOND records in the PDB files.

Structure
Interface for a structure object.

StructureException
An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align

Atom
A simple interface for an Atom.

Structure
Interface for a structure object.

StructureException
An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.helper

Atom
A simple interface for an Atom.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.pairwise

Atom
A simple interface for an Atom.

Structure
Interface for a structure object.

StructureException
An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui

Structure
Interface for a structure object.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.events

Structure
Interface for a structure object.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.util

Chain
Defines the interface for a Chain.

Structure
Interface for a structure object.

StructureException
An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io

Chain
Defines the interface for a Chain.

Group
This is the data structure for a single Group of atoms.

Structure
Interface for a structure object.

StructureException
An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io.mmcif

Structure
Interface for a structure object.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.server

PDBHeader
A class that contains PDB Header information.

Structure
Interface for a structure object.