Uses of Class
org.biojava.bio.structure.gui.util.AlignedPosition

Packages that use AlignedPosition

org.biojava.bio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.bio.structure.gui.events	Some event classes for the protein structure GUIs.
org.biojava.bio.structure.gui.util	Some utility classes for the protein structure GUIs.

Uses of AlignedPosition in org.biojava.bio.structure.gui

Methods in org.biojava.bio.structure.gui that return types with arguments of type AlignedPosition

List<AlignedPosition>

SequenceDisplay.getAligMap()

Uses of AlignedPosition in org.biojava.bio.structure.gui.events

Methods in org.biojava.bio.structure.gui.events with parameters of type AlignedPosition

void	JmolAlignedPositionListener.mouseOverPosition(AlignedPosition p)
void	AlignmentPositionListener.mouseOverPosition(AlignedPosition p)
void	JmolAlignedPositionListener.positionSelected(AlignedPosition p)
void	AlignmentPositionListener.positionSelected(AlignedPosition p)
void	JmolAlignedPositionListener.rangeSelected(AlignedPosition start, AlignedPosition end)
void	AlignmentPositionListener.rangeSelected(AlignedPosition start, AlignedPosition end)

Uses of AlignedPosition in org.biojava.bio.structure.gui.util

Method parameters in org.biojava.bio.structure.gui.util with type arguments of type AlignedPosition

void	SequenceScalePanel.setAligMap(List<AlignedPosition> apos)