Uses of Package
org.biojava.bio.structure.align.pairwise

Packages that use org.biojava.bio.structure.align.pairwise

org.biojava.bio.structure.align	Classes for the super-imposition of structures.
org.biojava.bio.structure.align.pairwise	Classes for the pairwise alignment of structures.
org.biojava.bio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.bio.structure.gui.util	Some utility classes for the protein structure GUIs.

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.align

AlternativeAlignment
Implements a class which handles one possible (alternative) solution.

FragmentPair
a pair of fragments of two protein structures

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.align.pairwise

Alignable

AlternativeAlignment
Implements a class which handles one possible (alternative) solution.

FragmentPair
a pair of fragments of two protein structures

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.gui

AlternativeAlignment
Implements a class which handles one possible (alternative) solution.

FragmentPair
a pair of fragments of two protein structures

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.gui.util

AlternativeAlignment
Implements a class which handles one possible (alternative) solution.